ggKbase home page

L3_069_242G1_scaffold_441

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_441_1
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

72..1439
DNA (1368bp) protein (456aa)
Resolvase, N-terminal domain protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VXB6_9CLOT
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDO60413.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_069_242G1_scaffold_441_2
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2368..5040)
DNA (2673bp) protein (891aa)
Efflux ABC transporter, permease protein n=2 Tax=Oscillibacter RepID=U2QRN3_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:ERK65580.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L3_069_242G1_scaffold_441_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5053..5721)
DNA (669bp) protein (223aa)
ABC transporter, ATP-binding protein n=3 Tax=Clostridiales RepID=G9YSN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24267.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ABC transporter ATP-binding protein
L3_069_242G1_scaffold_441_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5890..6756)
DNA (867bp) protein (289aa)
DNA-entry nuclease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEY5_9FIRM
DNA-entry nuclease {ECO:0000313|EMBL:EGJ46005.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
endonuclease
L3_069_242G1_scaffold_441_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6753..7163)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46006.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7342..7845
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46648.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7859..8431
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46647.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8530..9522)
DNA (993bp) protein (331aa)
birA; transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEV7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_441_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9666..10712
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45722.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_10
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(10806..11000)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HDK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY27805.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
transcriptional regulator
L3_069_242G1_scaffold_441_11
unknown

Not on your lists

comp(11008..11313)
DNA (306bp) protein (102aa)

This feature has no annotations

L3_069_242G1_scaffold_441_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11475..12368)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46352.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12368..14278)
DNA (1911bp) protein (637aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RY57_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_069_242G1_scaffold_441_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14512..14793
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45627.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_441_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14961..16292
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU8_9FIRM
L3_069_242G1_scaffold_441_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16289..17125
DNA (837bp) protein (279aa)
Two-component system, response regulator YcbB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU9_9FIRM
Two-component system, response regulator YcbB {ECO:0000313|EMBL:EGJ46645.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
FOG: CheY-like receiver
L3_069_242G1_scaffold_441_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17225..18043)
DNA (819bp) protein (273aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D1L0_CLOSY
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ERI73431.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
MerR family transcriptional regulator
L3_069_242G1_scaffold_441_18
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18273..19955
DNA (1683bp) protein (561aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
ABC transporter n=2 Tax=unclassified Lachnospiraceae RepID=E5XFB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83119.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_069_242G1_scaffold_441_19
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19957..21699
DNA (1743bp) protein (581aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
ABC transporter n=4 Tax=Clostridiales RepID=E5XFB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83118.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_069_242G1_scaffold_441_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21797..22597)
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L3_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EGJ48339.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type uncharacterized transport system, ATPase component
L3_069_242G1_scaffold_441_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22599..23504)
DNA (906bp) protein (302aa)
ABC transporter permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L4_9FIRM
ABC transporter permease {ECO:0000313|EMBL:EGJ48340.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23590..24963)
DNA (1374bp) protein (458aa)
ABC transporter substrate-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L5_9FIRM
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EGJ48341.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_23
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(25104..25676)
DNA (573bp) protein (191aa)
BioY protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BFE7_9FIRM
BioY protein {ECO:0000313|EMBL:CDA62983.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
L3_069_242G1_scaffold_441_24
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25703..26653)
DNA (951bp) protein (317aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Biotin synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AGF7_9CLOT
biotin synthase
L3_069_242G1_scaffold_441_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26871..28106
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46742.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
S-layer protein
L3_069_242G1_scaffold_441_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28287..28523
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46741.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28520..28780
DNA (261bp) protein (87aa)
Pro-sigmaK processing inhibitor BofA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD44_9FIRM
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:EGJ46740.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_441_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28875..30272
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46722.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative efflux protein, MATE family
L3_069_242G1_scaffold_441_29
unknown

Not on your lists

comp(30299..30505)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_069_242G1_scaffold_441_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30631..31203)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46737.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Displaying items 1-30 of 44 in total

View Taxonomy