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L3_069_242G1_scaffold_1913

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_1913_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(296..763)
DNA (468bp) protein (156aa)
Transcriptional regulator MarR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5W7_9CLOT
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDD38949.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Transcriptional regulators
L3_069_242G1_scaffold_1913_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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979..2883
DNA (1905bp) protein (635aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYE2_9CLOT
L3_069_242G1_scaffold_1913_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3316..6168
DNA (2853bp) protein (951aa)
UvrABC system protein A n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZDD0_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
excinuclease ABC, A subunit
L3_069_242G1_scaffold_1913_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6262..6783
DNA (522bp) protein (174aa)
Acetyltransferase GNAT family n=1 Tax=Clostridium sp. CAG:299 RepID=R7A875_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDD38952.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
acetyltransferase
L3_069_242G1_scaffold_1913_5
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6892..8433
DNA (1542bp) protein (514aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium sp. CAG:149 RepID=R5MPM2_9CLOT
GMP synthase
L3_069_242G1_scaffold_1913_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8572..9108)
DNA (537bp) protein (179aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IPT0_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CCY44193.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Helix-turn-helix.
L3_069_242G1_scaffold_1913_7
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9326..9505
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IV16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44194.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_069_242G1_scaffold_1913_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9526..10626
DNA (1101bp) protein (367aa)
Site-specific recombinase phage integrase family n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQ12_9CLOT
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CCY44195.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
site-specific recombinase XerD
L3_069_242G1_scaffold_1913_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10610..10933
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J577_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44196.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_069_242G1_scaffold_1913_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10930..12060
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WSE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06876.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_069_242G1_scaffold_1913_11
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12161..12394
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG88239.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L3_069_242G1_scaffold_1913_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12469..12744
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J5Y9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44332.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_069_242G1_scaffold_1913_13
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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12853..14166
DNA (1314bp) protein (438aa)
Plasmid recombination enzyme n=1 Tax=Dorea sp. CAG:317 RepID=R6W6Z1_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:CDD06878.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Plasmid recombination enzyme.
L3_069_242G1_scaffold_1913_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14348..17026
DNA (2679bp) protein (893aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6M0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44691.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_069_242G1_scaffold_1913_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17595..18458)
DNA (864bp) protein (288aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZFK6_9CLOT
L3_069_242G1_scaffold_1913_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18625..19836)
DNA (1212bp) protein (404aa)
SAM-dependent methyltransferase (EC:2.1.1.-)
SAM-dependent methyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZNE9_9CLOT
SAM-dependent methyltransferase {ECO:0000313|EMBL:CDD44909.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_069_242G1_scaffold_1913_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20074..21603
DNA (1530bp) protein (510aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z973_9CLOT
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:CDD44908.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_069_242G1_scaffold_1913_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21877..23364
DNA (1488bp) protein (496aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Clostridium sp. CAG:299 RepID=R7AQT2_9CLOT
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000313|EMBL:CDD44907.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L3_069_242G1_scaffold_1913_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23498..23935)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZV01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44906.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_242G1_scaffold_1913_20
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24064..25803)
DNA (1740bp) protein (580aa)
Subtilase family n=2 Tax=Clostridiales RepID=D6DH46_CLOSC
Subtilase family.
Subtilase family {ECO:0000313|EMBL:CBK77020.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_069_242G1_scaffold_1913_21
unknown

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25858..25998
DNA (141bp) protein (47aa)

This feature has no annotations

L3_069_242G1_scaffold_1913_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25958..26437
DNA (480bp) protein (160aa)
Lipoprotein signal peptidase {ECO:0000256|RuleBase:RU000594, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|RuleBase:RU000594, ECO:0000256|SAAS:SAAS00112508};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z6J8_9CLOT
L3_069_242G1_scaffold_1913_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26573..27895
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YT60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39178.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_242G1_scaffold_1913_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28018..28377)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZ05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39180.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
Displaying 24 items

View Taxonomy