ggKbase home page

L3_072_000G1_scaffold_5505

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_5505_1
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1..186)
DNA (186bp) protein (62aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
riboflavin synthase (EC:2.5.1.9)
UPI0003D62552 related cluster n=1 Tax=unknown RepID=UPI0003D62552
L3_072_000G1_scaffold_5505_2
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(198..1382)
DNA (1185bp) protein (395aa)
UPI0003D5B3FD related cluster n=1 Tax=unknown RepID=UPI0003D5B3FD
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
GTP cyclohydrolase II
L3_072_000G1_scaffold_5505_3
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1397..2041)
DNA (645bp) protein (215aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
UPI0003D656B6 related cluster n=1 Tax=unknown RepID=UPI0003D656B6
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ETI84660.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
L3_072_000G1_scaffold_5505_4
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2026..3159)
DNA (1134bp) protein (378aa)
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193)
UPI0003D6260D related cluster n=1 Tax=unknown RepID=UPI0003D6260D
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
L3_072_000G1_scaffold_5505_5
unknown

Not on your lists

3196..3453
DNA (258bp) protein (86aa)

This feature has no annotations

L3_072_000G1_scaffold_5505_6
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3342..3989)
DNA (648bp) protein (216aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
UPI0003D68197 related cluster n=1 Tax=unknown RepID=UPI0003D68197
L3_072_000G1_scaffold_5505_7
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3986..4867)
DNA (882bp) protein (294aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D67568 related cluster n=1 Tax=unknown RepID=UPI0003D67568
ribosome biogenesis GTPase RsgA
L3_072_000G1_scaffold_5505_8
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4867..4974)
DNA (108bp) protein (36aa)
UPI0003D5BBBF related cluster n=1 Tax=unknown RepID=UPI0003D5BBBF
Non-specific serine/threonine protein kinase {ECO:0000313|EMBL:ETI84656.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
Displaying 8 items

View Taxonomy