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L3_072_000G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 232 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_52_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..759)
DNA (759bp) protein (253aa)
diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:CAJ68970.1}; EC=4.3.1.15 {ECO:0000313|EMBL:CAJ68970.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Diaminopropionate ammonia-lyase family protein (Fragment) n=1 Tax=Clostridium difficile CD206 RepID=T3GV13_CLODI
L3_072_000G1_scaffold_52_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1122..1793)
DNA (672bp) protein (224aa)
Flavin reductase n=218 Tax=Clostridium difficile RepID=D5Q3N0_CLODI
iron-sulfur flavoprotein
Putative NAD(P)H-dependent FMN reductase {ECO:0000313|EMBL:CCK98470.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_000G1_scaffold_52_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1876..4092)
DNA (2217bp) protein (739aa)
putative xanthine dehydrogenase (EC:1.17.1.4)
Putative xanthine dehydrogenase {ECO:0000313|EMBL:CEJ98683.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CEJ98683.1};; Xanthine dehydrogenase {ECO:0000313|EMBL:CKH21175.1}; EC=1.3.7.9 {ECO:0000313|EMBL:CKH21175.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=2 Tax=Clostridium difficile RepID=T4PJE9_CLODI
L3_072_000G1_scaffold_52_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4095..4565)
DNA (471bp) protein (157aa)
xdhC2; xanthine dehydrogenase iron-sulfur binding subunit XdhC2 (EC:1.17.1.4)
Xanthine dehydrogenase iron-sulfur binding subunit XdhC2 n=191 Tax=Clostridium difficile RepID=Q188F6_CLOD6
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EQI83173.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_52_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4627..6048)
DNA (1422bp) protein (474aa)
Amidohydrolase family protein n=185 Tax=Clostridium difficile RepID=G6BQA5_CLODI
Amidohydrolase family protein {ECO:0000313|EMBL:EHJ26696.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
amidohydrolase
L3_072_000G1_scaffold_52_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6094..7455)
DNA (1362bp) protein (454aa)
Uracil-xanthine permease family protein n=11 Tax=Clostridium difficile RepID=T3FM29_CLODI
xanthine/uracile permease
Uracil-xanthine permease family protein {ECO:0000313|EMBL:EQE62939.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7752..9101)
DNA (1350bp) protein (450aa)
Xanthine permease family protein n=122 Tax=Clostridium difficile RepID=T2TM70_CLODI
xanthine/uracile permease
Putative xanthine/uracil permease {ECO:0000313|EMBL:CCL30307.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_52_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9430..10470)
DNA (1041bp) protein (347aa)
AAA domain family protein n=201 Tax=Clostridium difficile RepID=C9XJV7_CLODC
sigma-54-dependent transcriptional regulator
AAA domain family protein {ECO:0000313|EMBL:EQE62934.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10797..12065)
DNA (1269bp) protein (423aa)
McrBC 5-methylcytosine restriction system component family protein n=35 Tax=Clostridium difficile RepID=T2VPG7_CLODI
McrBC 5-methylcytosine restriction system component family protein {ECO:0000313|EMBL:EQH98893.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
conserved hypothetical protein
L3_072_000G1_scaffold_52_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12058..13509)
DNA (1452bp) protein (484aa)
AAA domain family protein n=12 Tax=Clostridium difficile RepID=T2VF88_CLODI
restriction enzyme
Putative restriction enzyme {ECO:0000313|EMBL:CCL22374.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_52_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13566..13919)
DNA (354bp) protein (118aa)
AAA domain family protein n=10 Tax=Clostridium difficile RepID=T3P7Y0_CLODI
restriction enzyme
Putative restriction enzyme {ECO:0000313|EMBL:CCL30310.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_52_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13948..14670)
DNA (723bp) protein (241aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=G6BQ99_CLODI
Putative cell division GTPase {ECO:0000313|EMBL:CCL22375.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_072_000G1_scaffold_52_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14720..15724)
DNA (1005bp) protein (335aa)
DeoR-like helix-turn-helix domain protein n=53 Tax=Clostridium difficile RepID=C9XJW1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04987.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_52_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15763..16263)
DNA (501bp) protein (167aa)
QueT transporter family protein n=199 Tax=Clostridium difficile RepID=T3GNZ4_CLODC
putative membrane protein, DUF988 family
QueT transporter family protein {ECO:0000313|EMBL:EQE62840.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16549..16860)
DNA (312bp) protein (104aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XJW3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62839.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17000..19264)
DNA (2265bp) protein (755aa)
Xanthine dehydrogenase subunit XdhD,molybdopterin-binding {ECO:0000313|EMBL:CCL22389.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCL22389.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
XdhD; xanthine dehydrogenase subunit XdhD (EC:1.17.1.4)
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=2 Tax=Clostridium difficile RepID=T4PJS3_CLODI
L3_072_000G1_scaffold_52_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19268..19717)
DNA (450bp) protein (150aa)
2Fe-2S iron-sulfur cluster binding domain protein n=191 Tax=Clostridium difficile RepID=C9XJW5_CLODC
[2Fe-2S]-binding subunit of oxidoreductase
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EQE62846.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19717..20505)
DNA (789bp) protein (263aa)
FAD binding domain in molybdopterin dehydrogenase family protein n=153 Tax=Clostridium difficile RepID=C9XJW6_CLODC
FAD-binding subunit of oxidoreductase
Xanthine dehydrogenase subunit XdhB,FAD-binding {ECO:0000313|EMBL:CCL30317.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_52_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20700..21968)
DNA (1269bp) protein (423aa)
Transporter, CPA2 family n=190 Tax=Clostridium difficile RepID=G6BCD6_CLODI
Na(+)/H(+) antiporter
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:CCK98488.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_000G1_scaffold_52_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22309..22470)
DNA (162bp) protein (54aa)
Uncharacterized protein n=192 Tax=Clostridium difficile RepID=F3Y5U5_CLOD6
conserved hypothetical protein
Putative dNA polymerase III {ECO:0000313|EMBL:EQH98903.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_000G1_scaffold_52_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22619..23701)
DNA (1083bp) protein (361aa)
ABC-type transport system, permease n=113 Tax=Clostridium difficile RepID=Q188H2_CLOD6
ABC transporter permease
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ68988.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_52_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23804..25399)
DNA (1596bp) protein (532aa)
Putative membrane protein n=6 Tax=Clostridium difficile RepID=T3T0K8_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQI83062.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
ABC-type transport system, permease
L3_072_000G1_scaffold_52_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25446..26153)
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=194 Tax=Clostridium difficile RepID=C9XJX0_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQE62850.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26406..27551
DNA (1146bp) protein (382aa)
ATP-dependent RNA helicase {ECO:0000313|EMBL:CKH21787.1}; EC=3.6.4.13 {ECO:0000313|EMBL:CKH21787.1};; Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CDS88348.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Helicase conserved C-terminal domain protein n=63 Tax=Clostridium difficile RepID=T3GJQ2_CLODC
putative ATP-dependent RNA helicase
L3_072_000G1_scaffold_52_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27665..29041)
DNA (1377bp) protein (459aa)
Permease family protein n=175 Tax=Clostridium difficile RepID=T3GIP5_CLODC
Xanthine/uracil/thiamine/ascorbate permeasefamily protein
Permease family protein {ECO:0000313|EMBL:EQE62856.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_52_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29487..30833
DNA (1347bp) protein (449aa)
MATE efflux family protein n=17 Tax=Clostridium difficile RepID=T2UQR1_CLODI
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CCL22399.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative drug/sodium antiporter, MATE family
L3_072_000G1_scaffold_52_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30893..32305
DNA (1413bp) protein (471aa)
Citrate transporter family protein n=10 Tax=Clostridium difficile RepID=T3P466_CLODI
sodium:sulfate symporter
Putative sodium:sulfate symporter {ECO:0000313|EMBL:CBE05010.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_52_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32427..33101)
DNA (675bp) protein (225aa)
putative transaldolase C-like (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Fructose-6-phosphate aldolase n=146 Tax=Clostridium difficile RepID=T3GIM9_CLODC
L3_072_000G1_scaffold_52_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33375..34139
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=181 Tax=Clostridium difficile RepID=Q185Q0_CLOD6
DeoR family transcriptional regulator
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:EQH98912.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_072_000G1_scaffold_52_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34428..34649)
DNA (222bp) protein (74aa)
Uncharacterized protein n=164 Tax=Clostridium difficile RepID=C9XJX7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30330.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 232 in total

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