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L3_072_000G1_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_87_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(157..612)
DNA (456bp) protein (152aa)
50S ribosomal protein L9 n=13 Tax=Lactobacillus rhamnosus RepID=B5QQ78_LACRH
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_87_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(629..2635)
DNA (2007bp) protein (669aa)
Signaling protein (Consists of PAS, a modified GGDEF and a DHH family phosphatase domains) n=13 Tax=Lactobacillus rhamnosus RepID=B5QQ77_LACRH
Phosphoesterase, DHH family protein {ECO:0000313|EMBL:CAR86016.1}; Putative phosphoesterase {ECO:0000313|EMBL:BAI40648.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
DHH family protein
L3_072_000G1_scaffold_87_3
unknown

Not on your lists

comp(2632..2754)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Lactobacillus rhamnosus ATCC 21052 RepID=G6AN06_LACRH
L3_072_000G1_scaffold_87_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2959..3894
DNA (936bp) protein (312aa)
ABC transporter, ATPase component n=5 Tax=Lactobacillus rhamnosus RepID=C7TFH2_LACRL
ABC transporter family protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEN81548.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_87_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3908..4648
DNA (741bp) protein (247aa)
Conserved protein n=7 Tax=Lactobacillus rhamnosus RepID=C7TFH1_LACRL
ABC transporter
ABC transporter {ECO:0000313|EMBL:KIC98639.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_87_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4651..5607
DNA (957bp) protein (319aa)
Conserved protein n=8 Tax=Lactobacillus rhamnosus RepID=C7TFH0_LACRL
Hypothetical protein
ABC-2 type transporter {ECO:0000313|EMBL:EEN81550.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_87_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5844..6485
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=4 Tax=Lactobacillus rhamnosus RepID=C7TFG9_LACRL
Transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGP72807.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6821..7447)
DNA (627bp) protein (209aa)
Transposase, IS4 family protein n=8 Tax=Lactobacillus rhamnosus RepID=C7TFG8_LACRL
is1; transposase, IS4 family protein
Uncharacterized protein {ECO:0000313|EMBL:EEN81552.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_87_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7582..8109)
DNA (528bp) protein (176aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TFG7_LACRL
hypothetical protein
Mobile element protein {ECO:0000313|EMBL:AGP72805.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8520..9254
DNA (735bp) protein (245aa)
Conserved protein n=7 Tax=Lactobacillus rhamnosus RepID=C7TFG6_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP72804.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9812..10735)
DNA (924bp) protein (308aa)
Permease of the drug/metabolite transporter (DMT) superfamily protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TFG5_LACRL
eamA-like transporter family protein
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:AGP72803.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10683..11096)
DNA (414bp) protein (138aa)
ADP-ribose pyrophosphatase n=3 Tax=Lactobacillus rhamnosus RepID=C7TFG4_LACRL
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:KIC98645.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_87_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11265..11642)
DNA (378bp) protein (126aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7TFG3_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC98646.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_87_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11858..12916)
DNA (1059bp) protein (353aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Aspartate-semialdehyde dehydrogenase n=6 Tax=Lactobacillus rhamnosus RepID=C7TFG2_LACRL
Aspartate-semialdehyde dehydrogenase
L3_072_000G1_scaffold_87_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12924..13931)
DNA (1008bp) protein (336aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Diaminopimelate epimerase n=4 Tax=Lactobacillus rhamnosus RepID=C7TFG1_LACRL
Diaminopimelate epimerase
L3_072_000G1_scaffold_87_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13934..15337)
DNA (1404bp) protein (468aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Aspartokinase n=1 Tax=Lactobacillus rhamnosus LMS2-1 RepID=C2JTL4_LACRH
aspartate kinase domain protein
L3_072_000G1_scaffold_87_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16279..17622
DNA (1344bp) protein (448aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Diaminopimelate decarboxylase n=3 Tax=Lactobacillus rhamnosus RepID=G7V1H0_LACRH
lysA; diaminopimelate decarboxylase
L3_072_000G1_scaffold_87_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17632..18336
DNA (705bp) protein (235aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023633}; EC=2.3.1.89 {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023632};; Tetrahydrodipicolinate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase n=4 Tax=Lactobacillus rhamnosus RepID=C7TFF8_LACRL
dapD; 2, 3, 4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
L3_072_000G1_scaffold_87_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18343..19494
DNA (1152bp) protein (384aa)
N-acetyldiaminopimelate deacetylase {ECO:0000256|HAMAP-Rule:MF_01692, ECO:0000256|SAAS:SAAS00009922}; EC=3.5.1.47 {ECO:0000256|HAMAP-Rule:MF_01692, ECO:0000256|SAAS:SAAS00009917};; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
N-acetyldiaminopimelate deacetylase n=5 Tax=Lactobacillus rhamnosus RepID=C7TFF7_LACRL
hipO; peptidase, M20/M25/M40 family
L3_072_000G1_scaffold_87_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19819..20724
DNA (906bp) protein (302aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
4-hydroxy-tetrahydrodipicolinate synthase n=6 Tax=Lactobacillus rhamnosus RepID=C7TFF5_LACRL
dapA; dihydrodipicolinate synthase
L3_072_000G1_scaffold_87_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20721..21488
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
4-hydroxy-tetrahydrodipicolinate reductase n=6 Tax=Lactobacillus rhamnosus RepID=C7TFF4_LACRL
dapB; dihydrodipicolinate reductase
L3_072_000G1_scaffold_87_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21628..22218)
DNA (591bp) protein (197aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=5 Tax=Lactobacillus rhamnosus RepID=C7TFF3_LACRL
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:KIC98655.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_87_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22837..23718)
DNA (882bp) protein (294aa)
Transcriptional regulator, xre family n=4 Tax=Lactobacillus rhamnosus RepID=C7TFF2_LACRL
Transcriptional regulator, xre family
Transcriptional regulator, xre family {ECO:0000313|EMBL:AGP72789.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23988..24674
DNA (687bp) protein (229aa)
ABC transporter, ATPase component n=5 Tax=Lactobacillus rhamnosus RepID=C7TFF1_LACRL
Putative ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AGP72788.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24671..25585
DNA (915bp) protein (305aa)
Conserved protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TFF0_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP72787.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25590..26831
DNA (1242bp) protein (414aa)
ABC transporter n=4 Tax=Lactobacillus rhamnosus RepID=C7TFE9_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP72786.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27143..27847
DNA (705bp) protein (235aa)
Conserved protein n=5 Tax=Lactobacillus rhamnosus RepID=C7TFE8_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP72785.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27856..28461)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=5 Tax=Lactobacillus rhamnosus RepID=C7TFE7_LACRL
TetR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGP72784.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_87_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28619..30445
DNA (1827bp) protein (609aa)
Transporter, major facilitator superfamily MFS_1 n=3 Tax=Lactobacillus rhamnosus RepID=C7TFE6_LACRL
MFS transporter permease {ECO:0000313|EMBL:KIC98662.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
MFS superfamily transporter
L3_072_000G1_scaffold_87_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31035..32060
DNA (1026bp) protein (342aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Anthranilate phosphoribosyltransferase n=5 Tax=Lactobacillus rhamnosus RepID=C7TFE4_LACRL
trpD; anthranilate phosphoribosyltransferase
Displaying items 1-30 of 122 in total

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