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L3_072_000G1_scaffold_168

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_168_1
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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2..2377
DNA (2376bp) protein (792aa)
Conjugative transposon ATP/GTP-binding protein n=13 Tax=Firmicutes RepID=C7WGW8_ENTFL
putative ATPase Tn5397, CTn3-Orf16
Conjugative transposon ATP/GTP-binding protein {ECO:0000313|EMBL:EEU64776.1}; TaxID=565643 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis DS5.;"
L3_072_000G1_scaffold_168_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2377..4545
DNA (2169bp) protein (723aa)
Conjugative transposon membrane protein n=16 Tax=Firmicutes RepID=G3GHY9_9BACL
membrane protein
Putative membrane protein Tn5397, CTn3-Orf15 {ECO:0000313|EMBL:CAJ67334.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_168_3
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4542..5543
DNA (1002bp) protein (334aa)
NLP/P60 n=13 Tax=Firmicutes RepID=C7WGW6_ENTFL
NLP/P60 {ECO:0000313|EMBL:EEU64774.1}; TaxID=565643 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis DS5.;"
NLP/P60 family protein
L3_072_000G1_scaffold_168_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5540..6472
DNA (933bp) protein (311aa)
Uncharacterized protein n=15 Tax=Firmicutes RepID=L2GYL6_ENTFC
conjugative transposon protein
Conjugative transposon protein {ECO:0000313|EMBL:CKH69021.1}; Orf13 {ECO:0000313|EMBL:AAO24817.1}; Putative conjugative transposon proteinTn5397,CTn3-Orf13 {ECO:0000313|EMBL:CEJ97034.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_168_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6757..8676
DNA (1920bp) protein (640aa)
Tetracycline resistance protein Tn5397 n=9 Tax=Firmicutes RepID=Q188V1_CLOD6
Small GTP-binding protein {ECO:0000313|EMBL:CKH68982.1}; Tetracycline resistance protein Tn5397 {ECO:0000313|EMBL:CEJ97036.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
tetM; Tetracycline resistance protein Tn5397
L3_072_000G1_scaffold_168_6
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(9025..9378)
DNA (354bp) protein (118aa)
Transcriptional regulator, HTH-type Tn5397,CTn3-Orf9 n=13 Tax=Firmicutes RepID=Q188V7_CLOD6
Transcriptional regulator, HTH-typeTn5397,CTn3-Orf9
Putative uncharacterized protein {ECO:0000313|EMBL:EEU64771.1}; TaxID=565643 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis DS5.;"
L3_072_000G1_scaffold_168_7
unknown

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comp(9486..9689)
DNA (204bp) protein (68aa)

This feature has no annotations

L3_072_000G1_scaffold_168_8
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9880..10305
DNA (426bp) protein (142aa)
RNA polymerase sigma-70 region 4, family protein n=18 Tax=Firmicutes RepID=A4H272_STRPY
putative RNA polymerase sigma factorTn5397,CTn3-Orf7
Putative uncharacterized protein {ECO:0000313|EMBL:EEU64770.1}; TaxID=565643 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis DS5.;"
L3_072_000G1_scaffold_168_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10302..10532
DNA (231bp) protein (77aa)
Uncharacterized protein n=11 Tax=Firmicutes RepID=A4H273_STRPY
conjugative transposon protein
Helix-turn-helix domain {ECO:0000313|EMBL:CKH68886.1}; Putative conjugative transposon proteinTn5397,CTn3-Orf8 {ECO:0000313|EMBL:CEJ97041.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_168_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10913..11053
DNA (141bp) protein (47aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=L2GYL1_ENTFC
putative conjugative transposon proteinTn5397,CTn3-Orf4
Putative conjugative transposon protein Tn5397,CTn3-Orf4 {ECO:0000313|EMBL:CCA62796.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_168_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11150..12751
DNA (1602bp) protein (534aa)
Recombinase site-specific resolvase family Tn5397, CTn3-Orf3 n=14 Tax=Firmicutes RepID=Q188V9_CLOD6
tndX; Recombinase site-specific resolvase familyTn5397, CTn3-Orf3
Recombinase {ECO:0000313|EMBL:CKH68812.1}; Recombinase site-specific resolvase familyTn5397, CTn3-Orf3 {ECO:0000313|EMBL:CEJ97044.1}; TndX {ECO:0000313|EMBL:AAF35174.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_168_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12792..12965
DNA (174bp) protein (58aa)
Fic/DOC family protein n=10 Tax=Clostridium difficile RepID=T4GG28_CLODI
Fic family protein putative filamentation induced by cAMP protein {ECO:0000313|EMBL:CCL24896.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
fic family protein
L3_072_000G1_scaffold_168_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13709..14359
DNA (651bp) protein (217aa)
Bacterial regulatory s, gntR family protein n=155 Tax=Clostridium difficile RepID=T3I9U4_CLODC
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL32684.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_168_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14661..16727
DNA (2067bp) protein (689aa)
Prolyl oligopeptidase family protein n=1 Tax=Clostridium difficile P42 RepID=T4PQ62_CLODI
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:EQG77992.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
peptidase
L3_072_000G1_scaffold_168_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16744..18699
DNA (1956bp) protein (652aa)
Prolyl oligopeptidase family protein n=12 Tax=Clostridium difficile RepID=T2UE21_CLODI
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:EQG77766.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative peptidase, S9 family
L3_072_000G1_scaffold_168_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18715..19905
DNA (1191bp) protein (397aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=G6BYX8_CLODI
hypothetical protein
Putative permease {ECO:0000313|EMBL:CCL24900.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_168_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20809..20937)
DNA (129bp) protein (43aa)
Uncharacterized protein n=16 Tax=Clostridium difficile RepID=T2UZ80_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ97193.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_168_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21054..21428
DNA (375bp) protein (125aa)
Bacterial regulatory s, gntR family protein n=96 Tax=Clostridium difficile RepID=T3IBA5_CLODC
Transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CAJ67484.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_168_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21430..22287
DNA (858bp) protein (286aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDS83948.1}; ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CDT46438.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT46438.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=12 Tax=Clostridium difficile RepID=T2XSQ1_CLODI
L3_072_000G1_scaffold_168_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22290..22928
DNA (639bp) protein (213aa)
ABC-2 transporter family protein n=94 Tax=Clostridium difficile RepID=T3I8D8_CLODC
ABC transporter permease
ABC-2 transporter family protein {ECO:0000313|EMBL:EQE69312.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_168_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23934..24668
DNA (735bp) protein (245aa)
Metallo-beta-lactamase domain protein n=12 Tax=Clostridium difficile RepID=G6BYY5_CLODI
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQE69301.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative beta-lactamase-like protein
L3_072_000G1_scaffold_168_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26245..27501
DNA (1257bp) protein (419aa)
Voltage gated chloride channel family protein n=74 Tax=Clostridium difficile RepID=T3IEG3_CLODC
Chloride ion channel protein {ECO:0000313|EMBL:CKH63923.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
chloride ion channel protein
L3_072_000G1_scaffold_168_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27564..28757
DNA (1194bp) protein (398aa)
Sodium/hydrogen exchanger family protein n=34 Tax=Clostridium difficile RepID=T2ZS75_CLODI
Na(+)/H(+) antiporter {ECO:0000313|EMBL:CDT81437.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cdu2; Na(+)/H(+) antiporter
L3_072_000G1_scaffold_168_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28958..29338
DNA (381bp) protein (127aa)
Penicillinase repressor family protein n=2 Tax=Clostridium difficile RepID=T4PQG5_CLODI
Cdu1 protein {ECO:0000313|EMBL:CAA63560.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cdu1; Transcriptional regulator, beta-lactamsrepressor
L3_072_000G1_scaffold_168_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29650..29895
DNA (246bp) protein (82aa)
Pathogenicity locus family protein n=159 Tax=Clostridium difficile RepID=C9XKV0_CLODC
d1; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ32990.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_000G1_scaffold_168_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30113..30382)
DNA (270bp) protein (90aa)
Uncharacterized protein n=195 Tax=Clostridium difficile RepID=T3I7P0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE69325.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_168_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31163..31900)
DNA (738bp) protein (246aa)
Uncharacterized protein n=168 Tax=Clostridium difficile RepID=G6BXC0_CLODI
d2; lantibiotic ABC transporter permease
ABC-type transport system,lantibiotic/multidrug-family permease {ECO:0000313|EMBL:CCL20772.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_168_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31912..32673)
DNA (762bp) protein (254aa)
ABC-2 transporter family protein n=51 Tax=Clostridium difficile RepID=T2TP56_CLODI
ABC-2 transporter family protein {ECO:0000313|EMBL:EQE69174.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
d3; lantibiotic ABC transporter permease
L3_072_000G1_scaffold_168_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32673..33587)
DNA (915bp) protein (305aa)
cdd4; lantibiotic/multidrug family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=100 Tax=Clostridium difficile RepID=T2TQ59_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG77833.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_168_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33758..34465
DNA (708bp) protein (236aa)
Two-component response regulator n=147 Tax=Clostridium difficile RepID=C9XKV5_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CCL32716.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 128 in total

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