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L3_072_000G1_scaffold_170

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_170_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(112..1548)
DNA (1437bp) protein (479aa)
Signal recognition particle protein n=9 Tax=Lactobacillus rhamnosus RepID=C7TJT0_LACRL
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1561..1902)
DNA (342bp) protein (114aa)
UPF0122 protein LRH_07326 n=12 Tax=Lactobacillus rhamnosus RepID=B5QJU4_LACRH
helix-turn-helix, YlxM / p13 like family protein
UPF0122 protein LOCK908_1682 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2308..2499
DNA (192bp) protein (64aa)
Uncharacterized protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TJT3_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP74321.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2566..2880
DNA (315bp) protein (105aa)
Conserved protein n=10 Tax=Lactobacillus rhamnosus RepID=C7TD50_LACRG
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KIC99082.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_170_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2952..3947)
DNA (996bp) protein (332aa)
Signal recognition particle receptor FtsY n=9 Tax=Lactobacillus rhamnosus RepID=C7TJT5_LACRL
ftsY; signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3947..7501)
DNA (3555bp) protein (1185aa)
Chromosome partition protein Smc n=3 Tax=Lactobacillus rhamnosus RepID=G7V1M6_LACRH
smc; chromosome segregation protein SMC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_170_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7521..8216)
DNA (696bp) protein (232aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Ribonuclease 3 n=7 Tax=Lactobacillus rhamnosus RepID=C7TJT7_LACRL
Ribonuclease III
L3_072_000G1_scaffold_170_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8318..10165)
DNA (1848bp) protein (616aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Lactobacillus rhamnosus RepID=C2JXS5_LACRH
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEN80163.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
oppA; oligopeptide-binding protein oppA
L3_072_000G1_scaffold_170_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10301..11212)
DNA (912bp) protein (304aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=10 Tax=Lactobacillus rhamnosus RepID=B5QJV1_LACRH
oppC; oligopeptide ABC transporter permease
ABC transporter, oligopeptide transporter permease protein {ECO:0000313|EMBL:CAR87548.1}; Oligopeptide ABC transporter permease {ECO:0000313|EMBL:BAI42116.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_170_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11229..12191)
DNA (963bp) protein (321aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=10 Tax=Lactobacillus rhamnosus RepID=B5QJV2_LACRH
oppB; oligopeptide ABC transporter permease
ABC transporter, oligopeptide transporter permease protein {ECO:0000313|EMBL:CAR87549.1}; Oligopeptide ABC transporter permease {ECO:0000313|EMBL:BAI42117.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_170_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12191..13144)
DNA (954bp) protein (318aa)
ABC transporter, oligopeptide transporter ATPase component n=5 Tax=Lactobacillus rhamnosus RepID=C7TJU1_LACRL
oppF; oligopeptide ABC transporter ATPase
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:AGP74329.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13147..14169)
DNA (1023bp) protein (341aa)
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component n=6 Tax=Lactobacillus rhamnosus RepID=B5QJV4_LACRH
Oligopeptide transport ATP-binding protein OppD
ABC transporter, oligopeptide transporter ATP-binding protein {ECO:0000313|EMBL:CAR87551.1}; Oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAI42119.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_170_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14459..14701)
DNA (243bp) protein (81aa)
Acyl carrier protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QJV6_LACRH
acpP; acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_170_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14755..15780)
DNA (1026bp) protein (342aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Phosphate acyltransferase n=4 Tax=Lactobacillus rhamnosus RepID=C7TJU5_LACRL
plsX; fatty acid/phospholipid synthesis protein PlsX
L3_072_000G1_scaffold_170_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15804..17843)
DNA (2040bp) protein (680aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EEN80171.1}; EC=3.6.1.- {ECO:0000313|EMBL:EEN80171.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
ATP-dependent DNA helicase RecG n=5 Tax=Lactobacillus rhamnosus RepID=C7TJU6_LACRL
recG; ATP-dependent DNA helicase RecG
L3_072_000G1_scaffold_170_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17956..19632)
DNA (1677bp) protein (559aa)
Dihydroxyacetone kinase(DAK2) related enzyme n=6 Tax=Lactobacillus rhamnosus RepID=C7TJU7_LACRL
hypothetical protein
Dihydroxyacetone kinase family protein {ECO:0000313|EMBL:AGP74335.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19693..20055)
DNA (363bp) protein (121aa)
Alkaline shock protein, general stress protein (Gls24) family n=12 Tax=Lactobacillus rhamnosus RepID=C7TD64_LACRG
hypothetical protein
Putative alkaline-shock protein {ECO:0000313|EMBL:EKS52773.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_170_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(20281..20466)
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=11 Tax=Lactobacillus rhamnosus RepID=B5QJW1_LACRH
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20621..21289)
DNA (669bp) protein (223aa)
Thiamine pyrophosphokinase n=4 Tax=Lactobacillus rhamnosus RepID=C7TJV0_LACRL
thiN; thiamine pyrophosphokinase
Thiamin pyrophosphokinase {ECO:0000313|EMBL:AGP74338.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21286..21936)
DNA (651bp) protein (217aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Ribulose-phosphate 3-epimerase n=4 Tax=Lactobacillus rhamnosus RepID=C7TJV1_LACRL
rpe; ribulose-phosphate 3-epimerase
L3_072_000G1_scaffold_170_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21964..22869)
DNA (906bp) protein (302aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Putative ribosome biogenesis GTPase RsgA n=5 Tax=Lactobacillus rhamnosus RepID=C7TJV2_LACRL
rsgA; ribosome small subunit-dependent GTPase A
L3_072_000G1_scaffold_170_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22866..24866)
DNA (2001bp) protein (667aa)
Kinase domain protein {ECO:0000313|EMBL:EEN80178.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EEN80178.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Lipopolysaccharide kinase family protein n=2 Tax=Lactobacillus rhamnosus RepID=G7V1P3_LACRH
lipopolysaccharide kinase family protein
L3_072_000G1_scaffold_170_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24863..25606)
DNA (744bp) protein (248aa)
Serine/threonine protein phosphatase n=7 Tax=Lactobacillus rhamnosus RepID=C7TJV4_LACRL
stp; serine/threonine phosphatase stp
Protein serine/threonine phosphatase PrpC, regulation of stationary phase {ECO:0000313|EMBL:AGP74342.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25616..26956)
DNA (1341bp) protein (447aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
tRNA and rRNA cytosine-C5-methytransferase (Sun protein) n=4 Tax=Lactobacillus rhamnosus RepID=C7TJV5_LACRL
sun; ribosomal RNA small subunit methyltransferase B
L3_072_000G1_scaffold_170_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26943..27899)
DNA (957bp) protein (319aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Methionyl-tRNA formyltransferase n=4 Tax=Lactobacillus rhamnosus RepID=G7V1P6_LACRH
fmt; methionyl-tRNA formyltransferase
L3_072_000G1_scaffold_170_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27958..30336)
DNA (2379bp) protein (793aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Primosomal protein N' n=3 Tax=Lactobacillus rhamnosus RepID=G7V1P7_LACRH
priA; primosomal protein N'
L3_072_000G1_scaffold_170_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30380..31579)
DNA (1200bp) protein (400aa)
Phosphopantothenoylcysteine decarboxylase /phosphopantothenate-cysteine ligase n=5 Tax=Lactobacillus rhamnosus RepID=C7TJV8_LACRL
coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase
Phosphopantothenoylcysteine decarboxylase/Phosphopantothenoylcysteine synthetase {ECO:0000313|EMBL:AGP74346.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_170_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31769..32011)
DNA (243bp) protein (81aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
DNA-directed RNA polymerase subunit omega n=13 Tax=Lactobacillus rhamnosus RepID=B5QJX1_LACRH
rpoZ; DNA-directed RNA polymerase subunit omega
L3_072_000G1_scaffold_170_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32070..32696)
DNA (627bp) protein (209aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Guanylate kinase n=12 Tax=Lactobacillus rhamnosus RepID=B5QJX2_LACRH
gmk; guanylate kinase
L3_072_000G1_scaffold_170_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32763..33530)
DNA (768bp) protein (256aa)
Phospholipase, patatin family n=2 Tax=Lactobacillus rhamnosus RepID=C2JXU9_LACRH
Phospholipase, patatin family {ECO:0000313|EMBL:EEN80187.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
esterase of the alpha-beta hydrolase superfamily
Displaying items 1-30 of 96 in total

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