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L3_072_000G1_scaffold_208

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Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_208_1
Firmicutes bacterium CAG:884, Firmicutes, Bacteria

Not on your lists

291..557
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:884 RepID=R5MQB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY93930.1}; TaxID=1262990 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:884.;"
hypothetical protein
L3_072_000G1_scaffold_208_2
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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611..1495
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SYG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ51408.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_000G1_scaffold_208_3
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1495..3291
DNA (1797bp) protein (599aa)
Aerotolerance regulator n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWM5_9CLOT
Aerotolerance regulator {ECO:0000313|EMBL:EKQ51407.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative membrane protein
L3_072_000G1_scaffold_208_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3301..6072
DNA (2772bp) protein (924aa)
Putative membrane protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TVC4_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EKQ51406.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_000G1_scaffold_208_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6131..6334)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=4 Tax=Clostridium butyricum RepID=B1R2H6_CLOBU
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rpmE; ribosomal protein L31
L3_072_000G1_scaffold_208_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6741..7940
DNA (1200bp) protein (400aa)
Response regulator (CheY-like and AraC-type DNA-binding domain containing protein) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TUU4_9CLOT
Response regulator (CheY-like and AraC-type DNA-binding domain containing protein) {ECO:0000313|EMBL:EKQ56420.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
response regulator
L3_072_000G1_scaffold_208_7
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7941..8876
DNA (936bp) protein (312aa)
Periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:EET89383.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
periplasmic binding protein/LacI transcriptional regulator
L3_072_000G1_scaffold_208_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9019..10029
DNA (1011bp) protein (337aa)
ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQP8_CLOSA
ytfQ; ABC transporter periplasmic-binding protein YtfQ
ABC transporter periplasmic-binding protein YtfQ {ECO:0000313|EMBL:AGX41762.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10112..11629
DNA (1518bp) protein (506aa)
ABC transporter ATP-binding protein YtfR n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMK6_CLOSA
ytfR; ABC transporter ATP-binding protein YtfR
ABC transporter ATP-binding protein YtfR {ECO:0000313|EMBL:AGX41763.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11631..12698
DNA (1068bp) protein (356aa)
Inner membrane ABC transporter permease protein YtfT n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLT0_CLOSA
ytfT; inner membrane ABC transporter permease protein YtfT
Inner membrane ABC transporter permease protein YtfT {ECO:0000313|EMBL:AGX41764.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12665..13669
DNA (1005bp) protein (335aa)
Inner membrane ABC transporter permease protein YjfF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MME5_CLOSA
yjfF; inner membrane ABC transporter permease protein YjfF
Inner membrane ABC transporter permease protein YjfF {ECO:0000313|EMBL:AGX41765.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14104..14523
DNA (420bp) protein (140aa)
Methyl-accepting chemotaxis protein McpC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MZV7_CLOSA
mcpC4; methyl-accepting chemotaxis protein McpC
Methyl-accepting chemotaxis protein McpC {ECO:0000313|EMBL:AGX45211.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14670..16433
DNA (1764bp) protein (588aa)
Histidine kinase internal region n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M1T7_CLOB8
Histidine kinase internal region {ECO:0000313|EMBL:AJH01522.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
histidine kinase internal region
L3_072_000G1_scaffold_208_14
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16518..17102
DNA (585bp) protein (195aa)
tdk; thymidine kinase Tdk (EC:2.7.1.21)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Thymidine kinase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ25_CLOSA
L3_072_000G1_scaffold_208_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17128..18909
DNA (1782bp) protein (594aa)
Release factor glutamine methyltransferase PrmC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLX6_CLOSA
prmC; release factor glutamine methyltransferase PrmC
Release factor glutamine methyltransferase PrmC {ECO:0000313|EMBL:AGX41523.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_16
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18968..20050
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBB7_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
prfA; peptide chain release factor 1
L3_072_000G1_scaffold_208_17
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20157..20744
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030A0F4D
Uncharacterized protein {ECO:0000313|EMBL:ETD69102.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_072_000G1_scaffold_208_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20765..21814
DNA (1050bp) protein (350aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA threonylcarbamoyladenosine biosynthesis protein YwlC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPC7_CLOSA
ywlC; tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L3_072_000G1_scaffold_208_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21918..22367
DNA (450bp) protein (150aa)
ywlF1; putative sugar phosphate isomerase YwlF (EC:5.3.1.-)
Putative sugar phosphate isomerase YwlF {ECO:0000313|EMBL:AGX41527.1}; EC=5.3.1.- {ECO:0000313|EMBL:AGX41527.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative sugar phosphate isomerase YwlF n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ29_CLOSA
L3_072_000G1_scaffold_208_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22415..23044
DNA (630bp) protein (210aa)
upp; uracil phosphoribosyltransferase Upp (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Uracil phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1R2I3_CLOBU
L3_072_000G1_scaffold_208_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23065..23559
DNA (495bp) protein (165aa)
CMP/dCMP deaminase, zinc-binding protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML60_CLOSA
CMP/dCMP deaminase, zinc-binding protein
CMP/dCMP deaminase, zinc-binding protein {ECO:0000313|EMBL:AGX41529.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23713..24864
DNA (1152bp) protein (384aa)
putative UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
Putative UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:AGX41530.1}; EC=5.1.3.14 {ECO:0000313|EMBL:AGX41530.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MLR4_CLOSA
L3_072_000G1_scaffold_208_23
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25240..26418
DNA (1179bp) protein (393aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETD69108.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ETD69108.1};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Acetyl-CoA acetyltransferase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FZJ0_CLOPA
acetyl-CoA acetyltransferase
L3_072_000G1_scaffold_208_24

Not on your lists

27092..27754
DNA (663bp) protein (221aa)
atpB; F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UZJ4_CLOBA
ATP synthase subunit a {ECO:0000313|EMBL:ETJ16464.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_072_000G1_scaffold_208_25

Not on your lists

27793..28008
DNA (216bp) protein (72aa)
atpE; F0F1 ATP synthase subunit C (EC:3.6.3.14)
ATP synthase subunit c n=4 Tax=Clostridium botulinum RepID=ATPL_CLOBA
ATP synthase subunit c {ECO:0000313|EMBL:ETJ16465.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_072_000G1_scaffold_208_26

Not on your lists

28068..28562
DNA (495bp) protein (165aa)
ATP synthase subunit b n=4 Tax=Clostridium butyricum RepID=B1R2J0_CLOBU
ATP synthase subunit b {ECO:0000313|EMBL:ETJ16466.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
atpF1; ATP synthase subunit b
L3_072_000G1_scaffold_208_27

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28565..29104
DNA (540bp) protein (180aa)
atpH; F0F1 ATP synthase subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=3 Tax=Clostridium butyricum RepID=B1R2J1_CLOBU
ATP synthase F1, delta subunit {ECO:0000313|EMBL:ETJ16467.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_072_000G1_scaffold_208_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29115..30629
DNA (1515bp) protein (505aa)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:CDH89433.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
ATP synthase subunit alpha n=2 Tax=Clostridium botulinum E RepID=ATPA_CLOBA
L3_072_000G1_scaffold_208_29
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30666..31517
DNA (852bp) protein (284aa)
ATP synthase gamma chain n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ38_CLOSA
atpG; ATP synthase gamma chain
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_208_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31532..32926
DNA (1395bp) protein (465aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
atpD1; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=4 Tax=Clostridium butyricum RepID=B1R2J4_CLOBU
Displaying items 1-30 of 71 in total

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