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L3_072_000G1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_216_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(236..523)
DNA (288bp) protein (96aa)
PTS system, fructose/mannitol-family IIB component {ECO:0000313|EMBL:CCL30791.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL30791.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
PTS system, Lactose/Cellobiose specific IIB subunit n=195 Tax=Clostridium difficile RepID=C9XMS2_CLODC
phosphotransferase system, B component
L3_072_000G1_scaffold_216_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(536..2455)
DNA (1920bp) protein (640aa)
PRD domain protein n=50 Tax=Clostridium difficile RepID=T3GHX8_CLODC
PTS system, fructose/mannitol-family IIABcomponent
PRD domain protein {ECO:0000313|EMBL:EQG76750.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_216_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2799..3323)
DNA (525bp) protein (175aa)
Uncharacterized protein n=206 Tax=Clostridium difficile RepID=C9XMS4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60823.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_216_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3327..3824)
DNA (498bp) protein (166aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Phosphopantetheine adenylyltransferase n=219 Tax=Clostridium difficile RepID=C9XMS5_CLODC
phosphopantetheine adenylyltransferase
L3_072_000G1_scaffold_216_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3826..4380)
DNA (555bp) protein (185aa)
Putative methyltransferase {ECO:0000313|EMBL:CKH36727.1}; EC=2.1.1.171 {ECO:0000313|EMBL:CKH36727.1};; Putative ribosomal RNA small subunit methyltransferase D {ECO:0000313|EMBL:CDS88462.1}; EC=2.1.1.- {ECO:0000313|EMBL:CDS88462.1};; Rna methyltransferase, rsmd family {ECO:0000313|EMBL:CEJ99183.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85183.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
RNA methyltransferase, RsmD family n=203 Tax=Clostridium difficile RepID=T3GHV2_CLODC
rna methyltransferase, rsmd family
L3_072_000G1_scaffold_216_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4439..6508)
DNA (2070bp) protein (690aa)
ATP-dependent DNA helicase n=3 Tax=Clostridium difficile RepID=C9XMS7_CLODC
ATP-dependent DNA helicase {ECO:0000313|EMBL:CBE05774.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
recG; ATP-dependent DNA helicase RecG
L3_072_000G1_scaffold_216_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6577..8220)
DNA (1644bp) protein (548aa)
DAK2 domain fusion YloV family protein n=40 Tax=Clostridium difficile RepID=T2TCB9_CLODI
Putative phosphatase {ECO:0000313|EMBL:CCL22912.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
phosphatase
L3_072_000G1_scaffold_216_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8239..8625)
DNA (387bp) protein (129aa)
Asp23 family protein n=211 Tax=Clostridium difficile RepID=C9XMS9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30798.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_216_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8950..9138
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=215 Tax=Clostridium difficile RepID=RL28_CLOD6
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
L3_072_000G1_scaffold_216_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9298..9519)
DNA (222bp) protein (74aa)
Putative membrane protein n=3 Tax=Clostridium difficile RepID=T2VWG0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH08108.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
uncharacterised protein
L3_072_000G1_scaffold_216_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9548..10024)
DNA (477bp) protein (159aa)
Transposase, YhgA-like family protein n=2 Tax=Clostridium difficile RepID=T4PHA4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK95080.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
hypothetical protein
L3_072_000G1_scaffold_216_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10243..11004
DNA (762bp) protein (254aa)
TipAS antibiotic-recognition domain protein n=36 Tax=Clostridium difficile RepID=G6C093_CLODI
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL22917.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_216_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11264..13192)
DNA (1929bp) protein (643aa)
PRD domain protein n=7 Tax=Clostridium difficile RepID=T3EJA3_CLODI
transcription antiterminator
Transcription antiterminator {ECO:0000313|EMBL:CCL22918.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_216_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13405..13878
DNA (474bp) protein (158aa)
PTS system, fructose subfamily, IIA component domain protein n=64 Tax=Clostridium difficile RepID=T2VXI1_CLODI
PTS system, mannose-specfic IIA component
PTS system, mannose-specfic IIA component {ECO:0000313|EMBL:CCL30804.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_216_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13881..14189
DNA (309bp) protein (103aa)
PTS system, mannose-specfic IIB component {ECO:0000313|EMBL:CCL22920.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL22920.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
PTS system, Fru family, IIB component domain protein n=203 Tax=Clostridium difficile RepID=C9XMT5_CLODC
PTS system transporter subunit IIB
L3_072_000G1_scaffold_216_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14303..15409
DNA (1107bp) protein (369aa)
PTS system, Fru family, IIC component domain protein n=2 Tax=Clostridium difficile RepID=T4PHB1_CLODI
PTS system, IIC component
PTS system%2C IIC component {ECO:0000313|EMBL:CKH37117.1}; PTS system, mannose-specfic IIC component {ECO:0000313|EMBL:CEJ99194.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_216_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15484..18162
DNA (2679bp) protein (893aa)
putative glycoside hydrolase, family 38;putative alpha-mannosidase (EC:3.2.1.24)
Alpha-mannosidase {ECO:0000313|EMBL:CKH37140.1}; EC=3.2.1.170 {ECO:0000313|EMBL:CKH37140.1};; Putative glycoside hydrolase, family 38putative alpha-mannosidase {ECO:0000313|EMBL:CEJ99195.1}; EC=3.2.1.24 {ECO:0000313|EMBL:CEJ99195.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Alpha mannosidase, middle domain protein n=3 Tax=Clostridium difficile RepID=T4PID9_CLODI
L3_072_000G1_scaffold_216_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18479..20815)
DNA (2337bp) protein (779aa)
Two-component sensor histidine kinase n=8 Tax=Clostridium difficile RepID=U4A727_CLODI
Two-component sensor histidine kinase {ECO:0000313|EMBL:CCL22923.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
two-component sensor histidine kinase
L3_072_000G1_scaffold_216_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20787..21503)
DNA (717bp) protein (239aa)
Response regulator n=196 Tax=Clostridium difficile RepID=T3GEA5_CLODC
Response regulator {ECO:0000313|EMBL:EQE60766.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Two-component response regulator
L3_072_000G1_scaffold_216_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21918..22574)
DNA (657bp) protein (219aa)
Nitroreductase family protein n=2 Tax=Clostridium difficile RepID=T4PHE3_CLODI
putative nitroreductase
Putative nitroreductase {ECO:0000313|EMBL:CAJ69461.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_216_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22629..23258)
DNA (630bp) protein (210aa)
putative hydrolase, HAD superfamily, subfamilyIA (EC:3.1.3.-)
Hydrolase {ECO:0000313|EMBL:CKH37276.1}; Putative hydrolase, HAD superfamily, subfamily IA {ECO:0000313|EMBL:CDS88479.1}; EC=3.1.3.- {ECO:0000313|EMBL:CDS88479.1};; Putative hydrolase, HAD superfamily, subfamilyIA {ECO:0000313|EMBL:CEJ99199.1}; EC=3.1.3.- {ECO:0000313|EMBL:CEJ99199.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
HAD hydrolase, IA, variant 1 family protein n=156 Tax=Clostridium difficile RepID=T3GHQ9_CLODC
L3_072_000G1_scaffold_216_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23389..24030)
DNA (642bp) protein (214aa)
thiN; Thiamine pyrophosphokinase (TPK) (Thiaminediphospho kinase) (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EQG75324.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EQG75324.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Thiamine pyrophosphokinase (TPK) (Thiamine diphospho kinase) n=167 Tax=Clostridium difficile RepID=Q182R4_CLOD6
L3_072_000G1_scaffold_216_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24039..24710)
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Ribulose-phosphate 3-epimerase n=148 Tax=Clostridium difficile RepID=C9XMU3_CLODC
ribulose-phosphate 3-epimerase
L3_072_000G1_scaffold_216_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24715..25599)
DNA (885bp) protein (295aa)
Putative ribosome biogenesis gtpase rsga {ECO:0000313|EMBL:CAJ69465.1}; EC=3.6.1.- {ECO:0000313|EMBL:CAJ69465.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Putative ribosome biogenesis GTPase RsgA n=73 Tax=Clostridium difficile RepID=C9XMU4_CLODC
ATP/GTP-binding protein
L3_072_000G1_scaffold_216_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25697..26434)
DNA (738bp) protein (246aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) {ECO:0000313|EMBL:CAJ69466.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAJ69466.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Short chain dehydrogenase family protein n=112 Tax=Clostridium difficile RepID=T3GDA9_CLODC
L3_072_000G1_scaffold_216_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26542..28557)
DNA (2016bp) protein (672aa)
Phosphotransferase enzyme family protein n=156 Tax=Clostridium difficile RepID=T3GHR3_CLODC
Phosphotransferase enzyme family protein {ECO:0000313|EMBL:EQI80376.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
stk; serine/threonine-protein kinase and phosphatase
L3_072_000G1_scaffold_216_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28574..29326)
DNA (753bp) protein (251aa)
Phosphatase 2C family protein n=217 Tax=Clostridium difficile RepID=C9XMU7_CLODC
serine/threonine phosphatase
Putative phosphatase, 2C family {ECO:0000313|EMBL:CCK95095.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_072_000G1_scaffold_216_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29346..30377)
DNA (1032bp) protein (344aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Probable dual-specificity RNA methyltransferase RlmN n=200 Tax=Clostridium difficile RepID=RLMN_CLOD6
putative radical SAM-family protein
L3_072_000G1_scaffold_216_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30385..31710)
DNA (1326bp) protein (442aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Ribosomal RNA small subunit methyltransferase n=175 Tax=Clostridium difficile RepID=C9XMU9_CLODC
rsmB; ribosomal RNA small subunit methyltransferase
L3_072_000G1_scaffold_216_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31772..32473)
DNA (702bp) protein (234aa)
Neutral zinc metallopeptidase family protein n=197 Tax=Clostridium difficile RepID=T2TC91_CLODI
membrane-associated neutral zinc metallopeptidase
Putative metal-dependent peptidase {ECO:0000313|EMBL:CCK87960.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Displaying items 1-30 of 169 in total

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