ggKbase home page

L3_072_000G1_scaffold_235

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_235_1
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..939
DNA (939bp) protein (313aa)
Collagen adhesion protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BLM8_CLOPF
collagen adhesion protein
Putative collagen adhesion protein {ECO:0000313|EMBL:AFS77374.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L3_072_000G1_scaffold_235_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1160..2824
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U2P1_9CLOT
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AJH01172.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
beta-lactamase domain-containing protein
L3_072_000G1_scaffold_235_3
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2913..3455
DNA (543bp) protein (181aa)
Membrane-associated phospholipid phosphatase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWR5_9CLOT
PAP2 family protein
PAP2 family protein {ECO:0000313|EMBL:CDM67599.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_000G1_scaffold_235_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3560..8110
DNA (4551bp) protein (1517aa)
Glutamate synthase domain 2 n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NPX7_9FIRM
Glutamate synthase domain 2 {ECO:0000313|EMBL:CCZ04174.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
glutamate synthase (ferredoxin)
L3_072_000G1_scaffold_235_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8091..9608
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HMN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY29434.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
glutamate synthase, small subunit
L3_072_000G1_scaffold_235_6
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9805..10320
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24UH7_DESHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDX02621.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
L3_072_000G1_scaffold_235_7
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10377..11279
DNA (903bp) protein (301aa)
Chemotaxis protein CheV n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LYT8_9CLOT
cheV; chemotaxis protein CheV
Chemotaxis protein CheV {ECO:0000313|EMBL:AGF58460.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_000G1_scaffold_235_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11402..11734
DNA (333bp) protein (111aa)
SdpI/YhfL protein family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MUN8_CLOSA
SdpI/YhfL protein family
SdpI/YhfL protein family {ECO:0000313|EMBL:AGX44310.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_235_9
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11838..12632)
DNA (795bp) protein (265aa)
Cof-like hydrolase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBY8_9CLOT
HAD-superfamily hydrolase
HAD-superfamily hydrolase {ECO:0000313|EMBL:CDM68225.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_000G1_scaffold_235_10
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12753..13253
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0N3Y2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB89569.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
L3_072_000G1_scaffold_235_11
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13255..13842
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0002D7242F
Uncharacterized protein {ECO:0000313|EMBL:EQB89568.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
L3_072_000G1_scaffold_235_12
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13851..14645
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0PPB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB89567.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
L3_072_000G1_scaffold_235_13
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14727..15395
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFD3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM68973.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_072_000G1_scaffold_235_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15392..16408
DNA (1017bp) protein (339aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH30_9CLOT
sensor histidine kinase
L3_072_000G1_scaffold_235_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16499..17266
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H814_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98544.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC transporter ATP-binding protein
L3_072_000G1_scaffold_235_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17256..19241
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3I7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98543.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
putative membrane protein
L3_072_000G1_scaffold_235_17
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19338..19859
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QH98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY27384.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
Hypothetical protein
L3_072_000G1_scaffold_235_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19935..20693
DNA (759bp) protein (253aa)
MerR family transcriptional regulator n=1 Tax=Clostridium botulinum RepID=UPI0003044CAC
MerR family transcriptional regulator
MerR-family transcriptional regulator {ECO:0000313|EMBL:CDH90767.1}; Transcriptional activator TipA {ECO:0000313|EMBL:ACD22527.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_000G1_scaffold_235_19
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20857..21366)
DNA (510bp) protein (170aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH66_9CLOT
ferritin
L3_072_000G1_scaffold_235_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21512..21877
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium tetani 12124569 RepID=U6EXZ3_CLOTA
Clostridium botulinum B2 450 B2_450_contig007, whole genome shotgun sequence {ECO:0000313|EMBL:KIS22631.1}; TaxID=1379739 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum B2 450.;"
hypothetical protein
L3_072_000G1_scaffold_235_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22004..23164
DNA (1161bp) protein (387aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Alanine racemase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LXY6_9CLOT
L3_072_000G1_scaffold_235_22
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23337..23705
DNA (369bp) protein (123aa)
GntR-family transcriptional regulator n=3 Tax=Clostridium butyricum RepID=B1QZS2_CLOBU
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KJZ86520.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
yhcF; HTH-type transcriptional regulator YhcF
L3_072_000G1_scaffold_235_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23706..24407
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UQM1_CLOBO
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EES49997.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
ABC transporter ATP-binding protein
L3_072_000G1_scaffold_235_24
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24401..25192
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4J9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHJ01574.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ABC transporter permease
L3_072_000G1_scaffold_235_25
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25324..25848
DNA (525bp) protein (175aa)
PAP2 family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QN77_9CLOT
PAP2 family protein {ECO:0000313|EMBL:EKY29454.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
membrane-associated phospholipid phosphatase
L3_072_000G1_scaffold_235_26
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25856..26812
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0PFW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB86627.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
hypothetical protein
L3_072_000G1_scaffold_235_27
unknown

Not on your lists

comp(26860..27594)
DNA (735bp) protein (245aa)

This feature has no annotations

L3_072_000G1_scaffold_235_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27720..28106
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BDL9_CLOBO
Uncharacterized protein {ECO:0000313|EMBL:EDS76415.1}; TaxID=445337 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C str. Eklund.;"
hypothetical protein
L3_072_000G1_scaffold_235_29
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28186..29586)
DNA (1401bp) protein (467aa)
MATE efflux family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QDN0_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EKY25780.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
MATE efflux family protein
L3_072_000G1_scaffold_235_30
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29723..30505
DNA (783bp) protein (261aa)
hisK; Histidinol-phosphatase (EC:3.1.3.15)
Histidinol-phosphatase {ECO:0000313|EMBL:CDM69673.1}; EC=3.1.3.15 {ECO:0000313|EMBL:CDM69673.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
Histidinol phosphate phosphatase, HisJ family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U7A8_9CLOT
Displaying items 1-30 of 94 in total

View Taxonomy