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L3_072_000G1_scaffold_242

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Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_242_1
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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361..1272
DNA (912bp) protein (304aa)
Thiamine biosynthesis protein n=8 Tax=Lactobacillus fermentum RepID=B2GC05_LACF3
Thiamine biosynthesis protein
Thiamine biosynthesis protein {ECO:0000313|EMBL:CDI69190.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L3_072_000G1_scaffold_242_2
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1475..2482)
DNA (1008bp) protein (336aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Diaminopimelate epimerase n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RHI8_LACFE
dapF; Diaminopimelate epimerase
L3_072_000G1_scaffold_242_3
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2495..3853)
DNA (1359bp) protein (453aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Aspartokinase n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RK85_LACFE
Aspartokinase
L3_072_000G1_scaffold_242_4
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4325..5644
DNA (1320bp) protein (440aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Diaminopimelate decarboxylase n=6 Tax=Lactobacillus fermentum RepID=B2GC08_LACF3
diaminopimelate decarboxylase
L3_072_000G1_scaffold_242_5
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5669..6382
DNA (714bp) protein (238aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023633}; EC=2.3.1.89 {ECO:0000256|HAMAP-Rule:MF_01691, ECO:0000256|SAAS:SAAS00023632};; Tetrahydrodipicolinate N-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_01691}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase n=6 Tax=Lactobacillus fermentum RepID=DAPH_LACF3
Tetrahydrodipicolinate succinyltransferase domain protein
L3_072_000G1_scaffold_242_6
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6382..7536
DNA (1155bp) protein (385aa)
N-acetyldiaminopimelate deacetylase {ECO:0000256|HAMAP-Rule:MF_01692, ECO:0000256|SAAS:SAAS00009922}; EC=3.5.1.47 {ECO:0000256|HAMAP-Rule:MF_01692, ECO:0000256|SAAS:SAAS00009917};; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
N-acetyldiaminopimelate deacetylase n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4ZGQ1_LACFE
Amidohydrolase
L3_072_000G1_scaffold_242_7
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7539..8474
DNA (936bp) protein (312aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
4-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=Lactobacillus fermentum RepID=C0WYW7_LACFE
Dihydrodipicolinate synthase
L3_072_000G1_scaffold_242_8
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8467..9246
DNA (780bp) protein (260aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4XHC8_LACFE
Dihydrodipicolinate reductase
L3_072_000G1_scaffold_242_9
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9271..10455
DNA (1185bp) protein (395aa)
Aromatic-amino-acid transaminase n=2 Tax=Lactobacillus fermentum RepID=D0DRF1_LACFE
Amino acid aminotransferase {ECO:0000313|EMBL:ESS01387.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Amino acid aminotransferase
L3_072_000G1_scaffold_242_10
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10470..11522
DNA (1053bp) protein (351aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Aspartate-semialdehyde dehydrogenase n=5 Tax=Lactobacillus fermentum RepID=R4RWJ6_LACFE
Aspartate-semialdehyde dehydrogenase
L3_072_000G1_scaffold_242_11
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11658..12998
DNA (1341bp) protein (447aa)
Potassium uptake protein, TrkH family n=3 Tax=Lactobacillus fermentum RepID=C0WYW2_LACFE
ATPase {ECO:0000313|EMBL:ESS01385.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
potassium transport protein
L3_072_000G1_scaffold_242_12
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12991..13665
DNA (675bp) protein (225aa)
TrkA N-terminal domain protein n=2 Tax=Lactobacillus fermentum RepID=D0DRE8_LACFE
TrkA N-terminal domain protein {ECO:0000313|EMBL:EEX26424.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
potassium transport protein
L3_072_000G1_scaffold_242_13
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13674..14375
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Lactobacillus fermentum RepID=D0DRE7_LACFE
SAM-dependent methyltransferase {ECO:0000313|EMBL:ESS01383.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
S-adenosyl-L-methionine-dependent methyltransferase
L3_072_000G1_scaffold_242_14
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14368..15189
DNA (822bp) protein (274aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Uncharacterized protein n=2 Tax=Lactobacillus fermentum RepID=V4XRU9_LACFE
hypothetical protein
L3_072_000G1_scaffold_242_15
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15209..16450
DNA (1242bp) protein (414aa)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Peptidase T n=3 Tax=Lactobacillus fermentum RepID=R4RWK1_LACFE
Peptidase T
L3_072_000G1_scaffold_242_16
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16522..16725)
DNA (204bp) protein (68aa)
Uncharacterized protein n=6 Tax=Lactobacillus fermentum RepID=R4RWH2_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJY07326.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_242_17
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16840..20139
DNA (3300bp) protein (1100aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
Putative DNA polymerase III, alpha subunit n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DRE3_LACFE
DNA-directed DNA polymerase III alpha subunit
L3_072_000G1_scaffold_242_18
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20277..21698
DNA (1422bp) protein (474aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Pyruvate kinase n=3 Tax=Lactobacillus fermentum RepID=B2GC22_LACF3
pyruvate kinase
L3_072_000G1_scaffold_242_19
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21854..22741
DNA (888bp) protein (296aa)
Translation initiation factor IF-3 n=3 Tax=Lactobacillus fermentum RepID=R4RST5_LACFE
Translation initiation factor IF-3
Uncharacterized protein {ECO:0000313|EMBL:CDI69172.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L3_072_000G1_scaffold_242_20
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22734..23612
DNA (879bp) protein (293aa)
Phage integrase SAM-like domain protein n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DRE0_LACFE
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EEX26416.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
integrase
L3_072_000G1_scaffold_242_21
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23593..23976
DNA (384bp) protein (128aa)
RibT family protein n=5 Tax=Lactobacillus fermentum RepID=D0DRD9_LACFE
putative reductase
Reductase {ECO:0000313|EMBL:KJY07321.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_242_22
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23969..24757
DNA (789bp) protein (263aa)
Segregation and condensation protein A n=6 Tax=Lactobacillus fermentum RepID=D8IHQ6_LACFC
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
Segregation and condensation protein
L3_072_000G1_scaffold_242_23
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24735..25322
DNA (588bp) protein (196aa)
Segregation and condensation protein B n=7 Tax=Lactobacillus fermentum RepID=B2GC27_LACF3
Segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_242_24
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25323..26048
DNA (726bp) protein (242aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
Pseudouridine synthase n=3 Tax=Lactobacillus fermentum RepID=C0WYU9_LACFE
Pseudouridine synthase
L3_072_000G1_scaffold_242_25
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26320..26898
DNA (579bp) protein (193aa)
Membrane protein family protein n=4 Tax=Lactobacillus fermentum RepID=R4RWL2_LACFE
hypothetical protein
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
L3_072_000G1_scaffold_242_26
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27125..28162
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0SMQ6_LACFE
Uncharacterized protein {ECO:0000313|EMBL:EQC60032.1}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
hypothetical protein
L3_072_000G1_scaffold_242_27
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28152..29609
DNA (1458bp) protein (486aa)
DNA helicase n=5 Tax=Lactobacillus fermentum RepID=B2GC31_LACF3
DNA helicase
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KJY07313.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_242_28
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29670..30224
DNA (555bp) protein (185aa)
LysM domain protein n=4 Tax=Lactobacillus fermentum RepID=R4RKB2_LACFE
LysM domain protein
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:KIL02158.1}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_242_29
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30248..30928
DNA (681bp) protein (227aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Cytidylate kinase n=5 Tax=Lactobacillus fermentum RepID=R4RSU7_LACFE
Cytidylate kinase
L3_072_000G1_scaffold_242_30
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


31005..32237
DNA (1233bp) protein (411aa)
30S ribosomal protein S1 n=6 Tax=Lactobacillus fermentum RepID=B2GC34_LACF3
rpsA; 30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:ESS01091.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Displaying items 1-30 of 68 in total

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