ggKbase home page

L3_072_000G1_scaffold_260

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_260_1
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(780..1325)
DNA (546bp) protein (182aa)
RNA polymerase sigma-70 factor n=3 Tax=Bacteroides RepID=A5ZG35_9BACE
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EIY23692.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
RNA polymerase ECF-type sigma factor
L3_072_000G1_scaffold_260_2
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1523..4399)
DNA (2877bp) protein (959aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5UV09_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ72552.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_3
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4518..5435)
DNA (918bp) protein (306aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R5U372_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ72553.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_4
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5456..7363)
DNA (1908bp) protein (636aa)
SusD family protein n=3 Tax=Bacteroides RepID=A5ZG32_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ72554.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_5
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7384..10758)
DNA (3375bp) protein (1125aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZG31_9BACE
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDM21141.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_072_000G1_scaffold_260_6
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10818..11444)
DNA (627bp) protein (209aa)
Uncharacterized protein n=2 Tax=Bacteroides caccae RepID=I8VEA5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21140.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
anti-sigma factor
L3_072_000G1_scaffold_260_7
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11741..12679
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q3J5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23686.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
anti-sigma factor
L3_072_000G1_scaffold_260_8
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12715..16050
DNA (3336bp) protein (1112aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Bacteroides RepID=A5ZG28_9BACE
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CCZ74611.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_9
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16077..18008
DNA (1932bp) protein (644aa)
SusD family protein n=2 Tax=Bacteroides caccae RepID=A5ZG27_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23684.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
starch-binding protein
L3_072_000G1_scaffold_260_10
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18030..19442
DNA (1413bp) protein (471aa)
F5/8 type C domain protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZG26_9BACE
F5/8 type C domain protein {ECO:0000313|EMBL:EDM21136.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_072_000G1_scaffold_260_11
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19514..22174
DNA (2661bp) protein (887aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VEA0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23682.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_072_000G1_scaffold_260_12
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22281..24680
DNA (2400bp) protein (800aa)
F5/8 type C domain protein n=2 Tax=Bacteroides caccae RepID=A5ZG24_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23681.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_072_000G1_scaffold_260_13
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25086..26498
DNA (1413bp) protein (471aa)
Oxidoreductase, NAD-binding domain protein n=2 Tax=Bacteroides caccae RepID=A5ZG23_9BACE
Glycosyl hydrolase family 109 protein 1 {ECO:0000313|EMBL:EIY23680.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Predicted dehydrogenases and related proteins
L3_072_000G1_scaffold_260_14
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26608..27498
DNA (891bp) protein (297aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZG21_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ74605.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_15
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27529..30924
DNA (3396bp) protein (1132aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q449_9BACE
L3_072_000G1_scaffold_260_16
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30954..32042
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5U8W7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ74603.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_17
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32068..32718)
DNA (651bp) protein (217aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZG18_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21128.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Protein of unknown function (DUF3256).
L3_072_000G1_scaffold_260_18
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32765..33667)
DNA (903bp) protein (301aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=I8VB85_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23675.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Predicted membrane protein
L3_072_000G1_scaffold_260_19
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33691..34479)
DNA (789bp) protein (263aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Bacteroides caccae CAG:21 RepID=R5U9C5_9BACE
L3_072_000G1_scaffold_260_20
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34494..38639)
DNA (4146bp) protein (1382aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5UG14_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ74599.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
two-component system sensor histidine kinase/response regulator
L3_072_000G1_scaffold_260_21
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(38938..39570)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5U8W4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ74598.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_072_000G1_scaffold_260_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40061..40630
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZG13_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21123.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_072_000G1_scaffold_260_23
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40643..42094
DNA (1452bp) protein (484aa)
Uncharacterized protein n=2 Tax=root RepID=A5ZG12_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21122.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_072_000G1_scaffold_260_24
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43035..44264
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q435_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23668.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L3_072_000G1_scaffold_260_25
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

44385..45464
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VE84_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23667.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_072_000G1_scaffold_260_26
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

45477..46838
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q3H5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23666.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L3_072_000G1_scaffold_260_27
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

46855..47847
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VB75_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23665.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
L3_072_000G1_scaffold_260_28
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

47873..50017
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9ETE0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23664.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
putative lipoprotein
L3_072_000G1_scaffold_260_29
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

50040..51071
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I9Q430_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23663.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
hypothetical protein
L3_072_000G1_scaffold_260_30
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

51090..52307
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8VE82_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY23662.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Displaying items 1-30 of 99 in total

View Taxonomy