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L3_072_000G1_scaffold_278

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_278_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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855..2525
DNA (1671bp) protein (557aa)
Diguanylate cyclase domain protein n=51 Tax=Clostridium difficile RepID=T2UCG3_CLODI
signaling protein
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG78081.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_278_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2647..3381)
DNA (735bp) protein (245aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Pyruvate formate-lyase 1-activating enzyme n=3 Tax=Clostridium difficile RepID=T3UPW8_CLODI
pyruvate formate-lyase activating enzyme
L3_072_000G1_scaffold_278_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3541..5772)
DNA (2232bp) protein (744aa)
Formate acetyltransferase {ECO:0000313|EMBL:EQI91997.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EQI91997.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
plfB; pyruvate formate-lyase (EC:2.3.1.54)
Formate acetyltransferase n=51 Tax=Clostridium difficile RepID=T2UZR2_CLODI
L3_072_000G1_scaffold_278_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6065..7126
DNA (1062bp) protein (354aa)
K+-dependent Na+/Ca+ exchanger family protein n=1 Tax=Clostridium difficile 70-100-2010 RepID=G6BV23_CLODI
Ca2+/Na+ antiporter
Putative Ca2+/Na+ antiporter {ECO:0000313|EMBL:CCL32860.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_278_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7217..8830
DNA (1614bp) protein (538aa)
Helicase conserved C-terminal domain protein n=209 Tax=Clostridium difficile RepID=C9XLY9_CLODC
ATP-dependent RNA helicase
Helicase conserved C-terminal domain protein {ECO:0000313|EMBL:EQE68663.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_278_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9105..11090
DNA (1986bp) protein (662aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=84 Tax=Clostridium difficile RepID=T3IAP5_CLODC
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EQE68638.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
transcription antiterminator
L3_072_000G1_scaffold_278_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11095..11529
DNA (435bp) protein (145aa)
Glucitol operon activator family protein n=150 Tax=Clostridium difficile RepID=C9XLZ1_CLODC
glucitol operon activator protein
Glucitol operon activator family protein {ECO:0000313|EMBL:EQE68656.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_278_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11558..12118
DNA (561bp) protein (187aa)
Glucitol/sorbitol permease IIC component n=184 Tax=Clostridium difficile RepID=C9XLZ2_CLODC
PTS system glucitol/sorbitol-specific transporter subunit IIC2
Glucitol/sorbitol permease IIC component {ECO:0000313|EMBL:EQG78335.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_278_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12182..12550
DNA (369bp) protein (123aa)
PTS system, glucitol/sorbitol-specific IIb component n=174 Tax=Clostridium difficile RepID=C9XLZ3_CLODC
PTS system glucitol/sorbitol-specific transporter subunit IIB
PTS system, glucitol/sorbitol-specific IIb component {ECO:0000313|EMBL:CBE02670.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_278_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12575..13141
DNA (567bp) protein (189aa)
PTS system, sorbitol-specific IIB C-terminal component (Glucitol) {ECO:0000313|EMBL:CCL32866.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL32866.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Glucitol/sorbitol-specific phosphotransferase enzyme IIB component n=177 Tax=Clostridium difficile RepID=C9XLZ4_CLODC
srlE'; PTS system glucitol/sorbitol-specific transporter subunit IIC
L3_072_000G1_scaffold_278_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13182..13547
DNA (366bp) protein (122aa)
srlB; PTS system sorbitol-specific transporter subunit IIA (EC:2.7.1.-)
PTS system glucitol/sorbitol-specific IIA component family protein n=163 Tax=Clostridium difficile RepID=T3IAQ0_CLODC
PTS system glucitol/sorbitol-specific IIA component family protein {ECO:0000313|EMBL:EQE68593.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_278_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13648..14421
DNA (774bp) protein (258aa)
srlD; Sorbitol 6-phosphate 2-dehydrogenase (Glucitol) (EC:1.1.1.140)
Sorbitol 6-phosphate 2-dehydrogenase (Glucitol) {ECO:0000313|EMBL:CEJ97315.1}; EC=1.1.1.140 {ECO:0000313|EMBL:CEJ97315.1};; Sorbitol-6-phosphate dehydrogenase {ECO:0000313|EMBL:CKH59542.1}; EC=1.1.1.140 {ECO:0000313|EMBL:CKH59542.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Sorbitol-6-phosphate 2-dehydrogenase n=130 Tax=Clostridium difficile RepID=T3I7H3_CLODC
L3_072_000G1_scaffold_278_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14770..16998
DNA (2229bp) protein (743aa)
Molybdopterin dinucleotide binding domain protein n=2 Tax=Clostridium difficile RepID=T4PTJ8_CLODI
Putative formate dehydrogenase {ECO:0000313|EMBL:CDS84624.1}; Putative oxidoreductase subunit {ECO:0000313|EMBL:CDS84175.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
formate dehydrogenase
L3_072_000G1_scaffold_278_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17086..17421
DNA (336bp) protein (112aa)
Anti-sigma F factor antagonist n=221 Tax=Clostridium difficile RepID=C9XLZ9_CLODC
anti-sigma F factor antagonist
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_000G1_scaffold_278_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17435..17863
DNA (429bp) protein (143aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor (Stage II sporulation protein AB) {ECO:0000313|EMBL:CCL32871.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CCL32871.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Anti-sigma F factor n=216 Tax=Clostridium difficile RepID=C9XM00_CLODC
L3_072_000G1_scaffold_278_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17886..18650
DNA (765bp) protein (255aa)
RNA polymerase sigma factor n=194 Tax=Clostridium difficile RepID=C9XM01_CLODC
sigF; RNA polymerase sigma-F factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_072_000G1_scaffold_278_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18930..19367
DNA (438bp) protein (146aa)
Stage V sporulation protein AC n=220 Tax=Clostridium difficile RepID=C9XM02_CLODC
stage V sporulation protein AC
Stage V sporulation protein AC {ECO:0000313|EMBL:EQG78279.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_278_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19534..20547
DNA (1014bp) protein (338aa)
Stage V sporulation protein AD n=2 Tax=Clostridium difficile RepID=T4PTK4_CLODI
stage V sporulation protein AD
Stage V sporulation protein AD {ECO:0000313|EMBL:EQI91978.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_278_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20561..20923
DNA (363bp) protein (121aa)
Stage V sporulation protein AE n=189 Tax=Clostridium difficile RepID=C9XM04_CLODC
spoVAE; stage V sporulation protein AE
Stage V sporulation protein AE {ECO:0000313|EMBL:CCL20889.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_278_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21106..22122
DNA (1017bp) protein (339aa)
Bacterial regulatory s, lacI family protein n=181 Tax=Clostridium difficile RepID=T3I4F1_CLODC
Transcriptional regulator, LacI family
Bacterial regulatory s, lacI family protein {ECO:0000313|EMBL:EQE68640.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_278_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22497..23339
DNA (843bp) protein (281aa)
Uncharacterized protein n=179 Tax=Clostridium difficile RepID=G6BV40_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL32877.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_278_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23354..23818
DNA (465bp) protein (155aa)
Uncharacterized protein n=200 Tax=Clostridium difficile RepID=G6B757_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQE68626.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_072_000G1_scaffold_278_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23832..24977
DNA (1146bp) protein (382aa)
Amidohydrolase n=88 Tax=Clostridium difficile RepID=G6BV42_CLODI
putative amidohydrolase, M20D peptidase family
Putative amidohydrolase, M20D peptidase family {ECO:0000313|EMBL:CCL20894.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_278_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25021..25956
DNA (936bp) protein (312aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=C9XM09_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI91975.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_278_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26327..26554)
DNA (228bp) protein (76aa)
Methyltransferase domain protein n=16 Tax=Clostridium difficile RepID=G6BV44_CLODI
Methyltransferase domain protein {ECO:0000313|EMBL:EHJ31193.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
type 11 methyltransferase
L3_072_000G1_scaffold_278_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26499..27053)
DNA (555bp) protein (185aa)
Methyltransferase domain protein n=2 Tax=Clostridium difficile RepID=T4PTT0_CLODI
Methyltransferase domain protein {ECO:0000313|EMBL:EHJ31193.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
type 11 methyltransferase
L3_072_000G1_scaffold_278_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27071..27637)
DNA (567bp) protein (189aa)
Uncharacterized protein n=17 Tax=Clostridium difficile RepID=G6BV45_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ31192.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
TetR family transcriptional regulator
L3_072_000G1_scaffold_278_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28548..28946)
DNA (399bp) protein (133aa)
Cytidine and deoxycytidylate deaminase zinc-binding region n=24 Tax=Clostridium difficile RepID=G6B751_CLODI
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EHJ31460.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
cytidine/deoxycytidylate deaminase family protein
L3_072_000G1_scaffold_278_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29245..31938)
DNA (2694bp) protein (898aa)
Penicillin binding transpeptidase domain protein n=3 Tax=Clostridium difficile RepID=T4PTP3_CLODI
putative penicillin-binding protein
Putative penicillin-binding protein {ECO:0000313|EMBL:CAJ67615.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_278_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32152..32850
DNA (699bp) protein (233aa)
Sporulation protein YunB n=215 Tax=Clostridium difficile RepID=D5Q114_CLODI
hypothetical protein
Putative sporulation protein YunB {ECO:0000313|EMBL:CCK96704.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Displaying items 1-30 of 64 in total

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