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L3_072_000G1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_296_1
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

132..281
DNA (150bp) protein (50aa)
Uncharacterized protein n=2 Tax=Lactobacillus fermentum RepID=R4RVF9_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL88419.1}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
L3_072_000G1_scaffold_296_2
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

441..1052
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RGI1_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL88420.1}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
L3_072_000G1_scaffold_296_3
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1204..1698
DNA (495bp) protein (165aa)
Thiol peroxidase n=4 Tax=Lactobacillus fermentum RepID=R4RJ98_LACFE
Thiol peroxidase
Redoxin family protein {ECO:0000313|EMBL:EEX25271.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
L3_072_000G1_scaffold_296_4
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


2004..4658
DNA (2655bp) protein (885aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Valine--tRNA ligase n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RRU5_LACFE
valS; Valyl-tRNA synthase
L3_072_000G1_scaffold_296_5
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4767..6089
DNA (1323bp) protein (441aa)
Folylpolyglutamate synthase n=5 Tax=Lactobacillus fermentum RepID=B2GB02_LACF3
Folylpolyglutamate synthase
Folylpolyglutamate synthase {ECO:0000313|EMBL:BAG26834.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_296_6
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6142..6768
DNA (627bp) protein (209aa)
DNA repair protein RadC n=5 Tax=Lactobacillus fermentum RepID=R4RVI1_LACFE
DNA repair protein RadC
Putative uncharacterized protein {ECO:0000313|EMBL:BAG26835.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_296_7
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6931..7941
DNA (1011bp) protein (337aa)
Cell shape determining protein MreB n=7 Tax=Lactobacillus fermentum RepID=B2GB04_LACF3
cell shape determining protein MreB
Rod shape-determining protein Mbl {ECO:0000313|EMBL:KJY06697.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_296_8
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8060..8911
DNA (852bp) protein (284aa)
Cell shape-determining protein MreC n=5 Tax=Lactobacillus fermentum RepID=B2GB05_LACF3
Cell shape determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_296_9
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8927..9460
DNA (534bp) protein (178aa)
Cell shape determining protein MreD n=5 Tax=Lactobacillus fermentum RepID=B2GB06_LACF3
Cell shape determining protein MreD
Cell shape determining protein MreD {ECO:0000313|EMBL:CDI69918.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L3_072_000G1_scaffold_296_10
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9937..10584
DNA (648bp) protein (216aa)
Glutamine ABC transporter permease component n=8 Tax=Lactobacillus fermentum RepID=B2GB07_LACF3
glutamine ABC transporter permease
Glutamine ABC transporter permease component {ECO:0000313|EMBL:BAG26839.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_296_11
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10599..11243
DNA (645bp) protein (215aa)
ABC transporter, ATP-binding protein n=2 Tax=Lactobacillus fermentum RepID=C0WWY7_LACFE
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEI22387.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
ABC superfamily ATP binding cassette transporter, ABC protein
L3_072_000G1_scaffold_296_12
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11259..12116
DNA (858bp) protein (286aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4ZGX2_LACFE
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESS01470.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
glutamine ABC transporter substrate-binding protein
L3_072_000G1_scaffold_296_13
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12372..13646
DNA (1275bp) protein (425aa)
M16B subfamily protease n=2 Tax=Lactobacillus fermentum RepID=T0SF31_LACFE
Uncharacterized protein {ECO:0000313|EMBL:CDI69922.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Peptidase M16 domain-containing protein
L3_072_000G1_scaffold_296_14
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13633..14934
DNA (1302bp) protein (434aa)
Zinc-dependent protease n=2 Tax=Lactobacillus fermentum RepID=R4RRY5_LACFE
Zinc-dependent protease
Zinc-dependent protease {ECO:0000313|EMBL:AGL88432.1}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
L3_072_000G1_scaffold_296_15
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15031..16035
DNA (1005bp) protein (335aa)
Transcription regulation protein n=4 Tax=Lactobacillus fermentum RepID=R4RVL5_LACFE
Transcription regulation protein
Uncharacterized protein {ECO:0000313|EMBL:KJY06689.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_296_16
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16051..16635
DNA (585bp) protein (195aa)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=5 Tax=Lactobacillus fermentum RepID=B2GB13_LACF3
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KJY06688.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_296_17
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16712..17956
DNA (1245bp) protein (415aa)
Putative competence-damage inducible protein n=2 Tax=Lactobacillus fermentum RepID=R4RGM2_LACFE
Competence/damage-inducible protein A
Putative competence-damage inducible protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_296_18
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


18050..19111
DNA (1062bp) protein (354aa)
Protein RecA n=6 Tax=Lactobacillus fermentum RepID=R4RJC1_LACFE
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
recA; Protein recA
L3_072_000G1_scaffold_296_19
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19506..21065
DNA (1560bp) protein (520aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
Ribonuclease Y n=4 Tax=Lactobacillus fermentum RepID=B2GB16_LACF3
2',3'-cyclic-nucleotide 2'-phosphodiesterase
L3_072_000G1_scaffold_296_20
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21159..23801
DNA (2643bp) protein (881aa)
DNA mismatch repair protein MutS n=4 Tax=Lactobacillus fermentum RepID=R4RVL9_LACFE
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
L3_072_000G1_scaffold_296_21
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23818..25761
DNA (1944bp) protein (648aa)
DNA mismatch repair protein MutL n=7 Tax=Lactobacillus fermentum RepID=MUTL_LACF3
mutL; DNA mismatch repair protein
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_296_22
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25815..26417
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Holliday junction ATP-dependent DNA helicase RuvA n=4 Tax=Lactobacillus fermentum RepID=RUVA_LACF3
Holliday junction ATP-dependent DNA helicase ruvA
L3_072_000G1_scaffold_296_23
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26428..27447
DNA (1020bp) protein (340aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Holliday junction ATP-dependent DNA helicase RuvB n=7 Tax=Lactobacillus fermentum RepID=B2GB20_LACF3
ruvB; Holliday junction DNA helicase RuvB
L3_072_000G1_scaffold_296_24
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27449..28378
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DUQ7_LACFE
Uncharacterized protein {ECO:0000313|EMBL:CDI68654.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
hypothetical protein
L3_072_000G1_scaffold_296_25
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28449..28871
DNA (423bp) protein (141aa)
Translocase subunit yajC n=6 Tax=Lactobacillus fermentum RepID=R4RVM3_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDI68655.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L3_072_000G1_scaffold_296_26
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29097..30056
DNA (960bp) protein (320aa)
Phosphoesterase, RecJ domain protein n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RVJ1_LACFE
hypothetical protein
DHHA1 domain protein {ECO:0000313|EMBL:EEI22402.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_296_27
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30056..31438
DNA (1383bp) protein (461aa)
DEAD-box ATP-dependent RNA helicase CshB {ECO:0000256|HAMAP-Rule:MF_01494}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_01494};; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
ATP-dependent RNA helicase DbpA n=3 Tax=Lactobacillus fermentum RepID=R4RGN1_LACFE
ATP-dependent RNA helicase DbpA
L3_072_000G1_scaffold_296_28
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


31691..34339
DNA (2649bp) protein (883aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Alanine--tRNA ligase n=5 Tax=Lactobacillus fermentum RepID=B2GB25_LACF3
alanyl-tRNA synthase
L3_072_000G1_scaffold_296_29
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34549..34812
DNA (264bp) protein (88aa)
UPF0297 protein LAF_0522 n=6 Tax=Lactobacillus fermentum RepID=B2GB26_LACF3
hypothetical protein
UPF0297 protein LAF_0522 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_296_30
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34812..35249
DNA (438bp) protein (146aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
Holliday junction resolvase n=4 Tax=Lactobacillus fermentum RepID=V4XJS9_LACFE
Holliday junction resolvase YqgF
Displaying items 1-30 of 65 in total

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