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L3_072_000G1_scaffold_382

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_382_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(649..840)
DNA (192bp) protein (64aa)
Penicillinase repressor family protein n=9 Tax=Clostridium difficile RepID=T4PD55_CLODI
Putative repressor {ECO:0000313|EMBL:CDS87715.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
repressor
L3_072_000G1_scaffold_382_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(945..1322)
DNA (378bp) protein (126aa)
Penicillinase repressor family protein n=9 Tax=Clostridium difficile RepID=T2VKZ7_CLODI
Transcriptional regulator, beta-lactams repressor Phage-type {ECO:0000313|EMBL:CDT13545.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Transcriptional regulator, beta-lactamsrepressor Phage-type
L3_072_000G1_scaffold_382_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1693..1809
DNA (117bp) protein (39aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=T2VLK9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87717.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_072_000G1_scaffold_382_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2127..2621
DNA (495bp) protein (165aa)
Prepilin-type N-terminal cleavage/methylation domain protein n=2 Tax=Clostridium difficile RepID=T4PK17_CLODI
Putative pilin protein {ECO:0000313|EMBL:CCL22632.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative pilin protein
L3_072_000G1_scaffold_382_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3613..3846)
DNA (234bp) protein (78aa)
Uncharacterized protein n=137 Tax=Clostridium difficile RepID=T3GJW9_CLODC
Uncharacterized protein {ECO:0000313|EMBL:CCL22634.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_072_000G1_scaffold_382_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4008..4358
DNA (351bp) protein (117aa)
Uncharacterized protein n=113 Tax=Clostridium difficile RepID=G6BZ48_CLODI
putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62428.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4360..4560
DNA (201bp) protein (67aa)
Helix-turn-helix family protein n=89 Tax=Clostridium difficile RepID=C9XL88_CLODC
transcriptional regulator
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCK91071.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L3_072_000G1_scaffold_382_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4883..5059
DNA (177bp) protein (59aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=T3GGK1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76855.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_382_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5284..5484
DNA (201bp) protein (67aa)
Cold shock protein n=177 Tax=Clostridium difficile RepID=C9XL92_CLODC
cspD; cold shock protein
Cold shock protein CspD {ECO:0000313|EMBL:EQE61947.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6119..6931
DNA (813bp) protein (271aa)
ABC transporter, substrate-binding protein0 n=204 Tax=Clostridium difficile RepID=C9XL93_CLODC
ABC transporter substrate-binding protein
Molybdate ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EQE61950.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6941..7732
DNA (792bp) protein (264aa)
Binding--dependent transport system inner membrane component family protein n=85 Tax=Clostridium difficile RepID=T3V0G2_CLODI
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQI81393.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
molybdenum-like ABC transporter permease
L3_072_000G1_scaffold_382_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7734..8429
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=159 Tax=Clostridium difficile RepID=C9XL95_CLODC
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CBE05337.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_382_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8416..9147
DNA (732bp) protein (244aa)
Uncharacterized protein n=69 Tax=Clostridium difficile RepID=C9XL96_CLODC
hypothetical protein
Domain of uncharacterised function (DUF364) {ECO:0000313|EMBL:CKH28164.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85650.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_382_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9461..10261
DNA (801bp) protein (267aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=Q185I9_CLOD6
putative exported protein
Putative exported protein {ECO:0000313|EMBL:CAJ69202.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_382_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10801..11517
DNA (717bp) protein (239aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4PJ33_CLODI
Two-component response regulator
Response regulator {ECO:0000313|EMBL:EQI81397.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_382_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11486..13075
DNA (1590bp) protein (530aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
His Kinase A domain protein n=10 Tax=Clostridium difficile RepID=T3N4H2_CLODI
two-component sensor histidine kinase
L3_072_000G1_scaffold_382_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13387..14889)
DNA (1503bp) protein (501aa)
phosphohexomutase (EC:5.4.2.-)
Phosphoglucomutase {ECO:0000313|EMBL:CKH28283.1}; EC=5.4.2.2 {ECO:0000313|EMBL:CKH28283.1};; Putative phosphohexomutase {ECO:0000313|EMBL:CEJ98936.1}; EC=5.4.2.- {ECO:0000313|EMBL:CEJ98936.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein n=101 Tax=Clostridium difficile RepID=T3GJR6_CLODC
L3_072_000G1_scaffold_382_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14999..15664)
DNA (666bp) protein (222aa)
Ribulose-phosphate 3 epimerase family protein n=27 Tax=Clostridium difficile RepID=T2XGE0_CLODI
Ribulose-phosphate 3 epimerase family protein {ECO:0000313|EMBL:EQH99121.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
rpe; ribulose-phosphate 3-epimerase
L3_072_000G1_scaffold_382_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15694..16140)
DNA (447bp) protein (149aa)
rpiB1; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B1 (Phosphoriboisomerase B) {ECO:0000313|EMBL:CCL30532.1}; EC=5.3.1.6 {ECO:0000313|EMBL:CCL30532.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Ribose 5-phosphate isomerase B n=214 Tax=Clostridium difficile RepID=C9XLA2_CLODC
L3_072_000G1_scaffold_382_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16315..17235)
DNA (921bp) protein (307aa)
Transketolase, central and C-terminal (Sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase) {ECO:0000313|EMBL:CAJ69208.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CAJ69208.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Transketolase n=129 Tax=Clostridium difficile RepID=C9XLA3_CLODC
tkt'; transketolase
L3_072_000G1_scaffold_382_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17238..18050)
DNA (813bp) protein (271aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=135 Tax=Clostridium difficile RepID=C9XLA4_CLODC
tkt; transketolase
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EHJ25137.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_000G1_scaffold_382_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18142..19173)
DNA (1032bp) protein (344aa)
putative sugar-phosphate dehydrogenase (EC:1.1.1.-)
Zinc-binding dehydrogenase family protein n=2 Tax=Clostridium difficile RepID=T4PJD7_CLODI
Zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EQG76780.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_382_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19173..20225)
DNA (1053bp) protein (351aa)
putative sugar-phosphate dehydrogenase (EC:1.1.1.-)
Zinc-binding dehydrogenase family protein n=56 Tax=Clostridium difficile RepID=T3GKB8_CLODC
Zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EQE61955.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20355..21629)
DNA (1275bp) protein (425aa)
PTS system, galactitol-specific IIC component family protein n=63 Tax=Clostridium difficile RepID=T3GI33_CLODC
PTS system, fructose/mannitol family IICcomponent
PTS system, fructose/mannitol family IIC component {ECO:0000313|EMBL:CAJ69212.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_382_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21688..21963)
DNA (276bp) protein (92aa)
gatB; PTS system galactitol-specific transporter subunit IIB (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIB subunit n=204 Tax=Clostridium difficile RepID=C9XLA8_CLODC
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EQE61941.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22024..22482)
DNA (459bp) protein (153aa)
PTS system, fructose/mannitol family IIAcomponent (EC:2.7.1.69)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=113 Tax=Clostridium difficile RepID=G6BZ67_CLODI
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein {ECO:0000313|EMBL:EQE61940.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_382_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23071..25995)
DNA (2925bp) protein (975aa)
Sigma-54 interaction domain protein n=2 Tax=Clostridium difficile RepID=T4PJE2_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EQE61492.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Transcription antiterminator, PTS operonregulator
L3_072_000G1_scaffold_382_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26147..26797)
DNA (651bp) protein (217aa)
tal; Transaldolase (EC:2.2.1.2)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
Probable transaldolase n=159 Tax=Clostridium difficile RepID=TAL_CLOD6
L3_072_000G1_scaffold_382_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26861..27433)
DNA (573bp) protein (191aa)
xpt; Xanthine phosphoribosyltransferase (XPRTase) (EC:2.4.2.22)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Xanthine phosphoribosyltransferase n=159 Tax=Clostridium difficile RepID=XPT_CLOD6
L3_072_000G1_scaffold_382_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27823..28974)
DNA (1152bp) protein (384aa)
Mannitol-1-phosphate 5-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00196, ECO:0000256|SAAS:SAAS00015323}; EC=1.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00196, ECO:0000256|SAAS:SAAS00015317};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
mtlD; mannitol-1-phosphate 5-dehydrogenase (EC:1.1.1.17)
Mannitol-1-phosphate 5-dehydrogenase n=74 Tax=Clostridium difficile RepID=T2TCY2_CLODI
Displaying items 1-30 of 91 in total

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