ggKbase home page

L3_072_000G1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_419_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

267..1370
DNA (1104bp) protein (368aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
DNA polymerase IV n=8 Tax=Lactobacillus rhamnosus RepID=C7THB0_LACRL
dinB; DNA polymerase IV
L3_072_000G1_scaffold_419_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1970..3283
DNA (1314bp) protein (438aa)
Transcriptional regulator with CBS domains n=7 Tax=Lactobacillus rhamnosus RepID=B5QMM6_LACRH
transcriptional regulator
Thioesterase {ECO:0000313|EMBL:KIC97558.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3290..4246
DNA (957bp) protein (319aa)
Phosphoesterase, DHH family protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB2_LACRL
ytqI; phosphoesterase, DHH family protein
Oligoribonuclease {ECO:0000313|EMBL:KIC97557.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4252..5598
DNA (1347bp) protein (449aa)
ATP-dependent RNA helicase n=5 Tax=Lactobacillus rhamnosus RepID=C7THB3_LACRL
ATP-dependent RNA helicase YqfR
DEAD/DEAH box helicase {ECO:0000313|EMBL:KIC97556.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5603..6538
DNA (936bp) protein (312aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB4_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73439.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6754..7098
DNA (345bp) protein (115aa)
Conserved protein n=4 Tax=Lactobacillus rhamnosus RepID=C7THB5_LACRL
hypothetical protein
ATP-dependent nuclease {ECO:0000313|EMBL:KIC97554.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


7237..9882
DNA (2646bp) protein (882aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanine--tRNA ligase; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Alanine--tRNA ligase n=3 Tax=Lactobacillus rhamnosus RepID=S5A017_LACRH
alaS; alanine--tRNA ligase
L3_072_000G1_scaffold_419_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10034..11137
DNA (1104bp) protein (368aa)
Uncharacterized protein n=3 Tax=Lactobacillus rhamnosus RepID=S5A9L8_LACRH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC97552.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_9
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11241..11501
DNA (261bp) protein (87aa)
UPF0297 protein LSEI_0786 n=68 Tax=Lactobacillus RepID=Y786_LACC3
Hypothetical protein
UPF0297 protein LBCZ_0564 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=219334 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei subsp. casei ATCC 393.;"
L3_072_000G1_scaffold_419_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11501..11935
DNA (435bp) protein (145aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Putative Holliday junction resolvase n=2 Tax=Lactobacillus rhamnosus RepID=G7V4R5_LACRH
hypothetical protein
L3_072_000G1_scaffold_419_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11982..12302
DNA (321bp) protein (107aa)
UPF0473 protein LRH_00277 n=11 Tax=Lactobacillus rhamnosus RepID=B5QMN5_LACRH
hypothetical protein
UPF0473 protein LOCK908_0764 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12500..12745
DNA (246bp) protein (82aa)
Stimulator of FtsZ polymerization and component of cell-division Z-ring n=13 Tax=Lactobacillus rhamnosus RepID=B5QMN6_LACRH
stimulator of FtsZ polymerization and component of cell-division Z-ring
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12758..13291
DNA (534bp) protein (178aa)
Predicted membrane ancor connecting MutS2 with cell-division Z-ring n=7 Tax=Lactobacillus rhamnosus RepID=B5QMN7_LACRH
putative colicin V production protein
Colicin V synthesis protein {ECO:0000313|EMBL:KIC97547.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13359..15719
DNA (2361bp) protein (787aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Endonuclease MutS2 n=4 Tax=Lactobacillus rhamnosus RepID=C7THC4_LACRL
mutS; DNA mismatch repair protein mutS
L3_072_000G1_scaffold_419_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15787..16098
DNA (312bp) protein (104aa)
Thioredoxin n=13 Tax=Lactobacillus rhamnosus RepID=B5QMN9_LACRH
trxA; thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_419_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16663..18183
DNA (1521bp) protein (507aa)
D-alanine--poly(phosphoribitol) ligase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00593, ECO:0000256|SAAS:SAAS00015849}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00593, ECO:0000256|SAAS:SAAS00015392};; D-alanine-D-alanyl carrier protein ligase {ECO:0000256|HAMAP-Rule:MF_00593}; D-alanine-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00593}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
D-alanine--poly(phosphoribitol) ligase subunit 1 n=4 Tax=Lactobacillus rhamnosus RepID=DLTA_LACRH
dltA; D-alanine--poly(phosphoribitol) ligase subunit 1
L3_072_000G1_scaffold_419_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18183..19400
DNA (1218bp) protein (406aa)
D-alanyl transfer protein n=10 Tax=Lactobacillus rhamnosus RepID=B5QMP2_LACRH
dltB; D-alanyl transfer protein DltB
D-alanyl transfer protein DltB {ECO:0000313|EMBL:BAI41282.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_419_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19470..19715
DNA (246bp) protein (82aa)
D-alanine--poly(phosphoribitol) ligase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00565}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00565};; D-alanyl carrier protein {ECO:0000256|HAMAP-Rule:MF_00565}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
D-alanine--poly(phosphoribitol) ligase subunit 2 n=14 Tax=Lactobacillus rhamnosus RepID=DLTC_LACRH
dltC; D-alanine--poly(phosphoribitol) ligase subunit 2
L3_072_000G1_scaffold_419_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19712..20983
DNA (1272bp) protein (424aa)
Extramembranal protein, DltD protein n=9 Tax=Lactobacillus rhamnosus RepID=C7THD0_LACRL
Poly(glycerophosphate chain) D-alanine transfer protein DltD
DltD central region {ECO:0000313|EMBL:EEN78807.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_419_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21119..21601)
DNA (483bp) protein (161aa)
Hydrocarbon binding protein n=7 Tax=Lactobacillus rhamnosus RepID=C7TAN3_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73456.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


21896..23350
DNA (1455bp) protein (485aa)
Glutamate racemase {ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.- {ECO:0000256|SAAS:SAAS00274607};; EC=5.1.1.3 {ECO:0000256|SAAS:SAAS00041166};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Glutamate racemase n=6 Tax=Lactobacillus RepID=C7THD2_LACRL
rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
L3_072_000G1_scaffold_419_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23347..23871
DNA (525bp) protein (175aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Phosphoesterase n=5 Tax=Lactobacillus rhamnosus RepID=C7THD3_LACRL
phosphodiesterase
L3_072_000G1_scaffold_419_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23964..24695)
DNA (732bp) protein (244aa)
Glycerol uptake facilitator protein n=7 Tax=Lactobacillus rhamnosus RepID=C7THD4_LACRL
Glycerol uptake facilitator protein
Glycerol uptake facilitator protein {ECO:0000313|EMBL:AGP73459.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24983..25468
DNA (486bp) protein (162aa)
CBS domain-containing protein ykuL n=4 Tax=Lactobacillus rhamnosus RepID=G7V4T1_LACRH
ykuL; CBS domain-containing protein ykuL
CBS domain containing protein {ECO:0000313|EMBL:AGP73460.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25520..26422)
DNA (903bp) protein (301aa)
Conserved membrane protein n=5 Tax=Lactobacillus rhamnosus RepID=C7THD6_LACRL
membrane protein
Membrane protein {ECO:0000313|EMBL:AGP73461.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26474..27358)
DNA (885bp) protein (295aa)
Small-conductance mechanosensitive channel n=5 Tax=Lactobacillus rhamnosus RepID=C7THD7_LACRL
small-conductance mechanosensitive channel
Potassium efflux system KefA protein/Small-conductance mechanosensitive channel {ECO:0000313|EMBL:AGP73462.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_419_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27403..27768)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Lactobacillus rhamnosus 2166 RepID=U2GGU5_LACRH
Uncharacterized protein {ECO:0000313|EMBL:KIC97128.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
hypothetical protein
L3_072_000G1_scaffold_419_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28090..28518
DNA (429bp) protein (143aa)
General stress protein n=8 Tax=Lactobacillus rhamnosus RepID=S4ZW04_LACRH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEN78785.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_419_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28533..29033
DNA (501bp) protein (167aa)
Conserved protein n=6 Tax=Lactobacillus rhamnosus RepID=C7THD9_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC97531.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_419_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29172..29705
DNA (534bp) protein (178aa)
Transcriptional regulator n=6 Tax=Lactobacillus rhamnosus RepID=C7THE0_LACRL
HTH domain protein
Transcriptional repressor for NAD biosynthesis in gram-positives {ECO:0000313|EMBL:AGP73467.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Displaying items 1-30 of 50 in total

View Taxonomy