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L3_072_000G1_scaffold_456

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_456_1
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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1..75
DNA (75bp) protein (25aa)
UPI0003D60C8A related cluster n=1 Tax=unknown RepID=UPI0003D60C8A
Transposase, IS111A/IS1328/IS1533 {ECO:0000313|EMBL:ETJ04186.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
L3_072_000G1_scaffold_456_2
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(211..1401)
DNA (1191bp) protein (397aa)
elongation factor Tu (EC:2.7.7.4)
Elongation factor Tu n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6B3_9ACTO
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
L3_072_000G1_scaffold_456_3
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1593..3728)
DNA (2136bp) protein (712aa)
Elongation factor G n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6B2_9ACTO
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
translation elongation factor G
L3_072_000G1_scaffold_456_4
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3822..4292)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6B1_9ACTO
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
30S ribosomal protein S7
L3_072_000G1_scaffold_456_5
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(4292..4666)
DNA (375bp) protein (125aa)
UPI0003110BE4 related cluster n=1 Tax=unknown RepID=UPI0003110BE4
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
30S ribosomal protein S12
L3_072_000G1_scaffold_456_6
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4956..5627)
DNA (672bp) protein (224aa)
UPI0003D5F1E0 related cluster n=1 Tax=unknown RepID=UPI0003D5F1E0
Uncharacterized protein {ECO:0000313|EMBL:ETJ05997.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
L3_072_000G1_scaffold_456_7
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5772..6482)
DNA (711bp) protein (237aa)
Transcriptional regulator, LuxR family n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A7_9ACTO
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEH65801.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
two-component system response regulator
L3_072_000G1_scaffold_456_8
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6819..10772)
DNA (3954bp) protein (1318aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
rpoC; DNA-directed RNA polymerase (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A6_9ACTO
L3_072_000G1_scaffold_456_9
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10904..14332)
DNA (3429bp) protein (1143aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A5_9ACTO
DNA-directed RNA polymerase subunit beta
L3_072_000G1_scaffold_456_10
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(15575..15964)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A4_9ACTO
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
50S ribosomal protein L7/L12
L3_072_000G1_scaffold_456_11
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16046..16567)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A3_9ACTO
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
50S ribosomal protein L10P
L3_072_000G1_scaffold_456_12
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16867..17652
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EEH65796.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
L3_072_000G1_scaffold_456_13
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17751..18437)
DNA (687bp) protein (229aa)
50S ribosomal protein L1 n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A1_9ACTO
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
50S ribosomal protein L1
L3_072_000G1_scaffold_456_14
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18513..18944)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6A0_9ACTO
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
rplK; 50S ribosomal protein L11
L3_072_000G1_scaffold_456_15
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19169..19960)
DNA (792bp) protein (264aa)
Transcription termination/antitermination protein NusG n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
NusG antitermination factor
L3_072_000G1_scaffold_456_16
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20021..20263)
DNA (243bp) protein (81aa)
Protein translocase subunit SecE n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W698_9ACTO
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Preprotein translocase subunit SecE
L3_072_000G1_scaffold_456_17
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20620..21834
DNA (1215bp) protein (405aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEH65791.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEH65791.1};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Aminotransferase, class I/II n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W697_9ACTO
class I and II aminotransferase
L3_072_000G1_scaffold_456_18
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22067..23323)
DNA (1257bp) protein (419aa)
Phosphotransferase enzyme family n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W696_9ACTO
Phosphotransferase enzyme family {ECO:0000313|EMBL:EEH65790.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
hypothetical protein
L3_072_000G1_scaffold_456_19
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23390..24412
DNA (1023bp) protein (341aa)
Adenosine deaminase {ECO:0000313|EMBL:EEH65789.1}; EC=3.5.4.4 {ECO:0000313|EMBL:EEH65789.1};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
adenosine deaminase (EC:3.5.4.4)
Adenosine deaminase n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W695_9ACTO
L3_072_000G1_scaffold_456_20
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24409..25290)
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W694_9ACTO
Putative membrane protein {ECO:0000313|EMBL:EEH65788.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
permease
L3_072_000G1_scaffold_456_21
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25308..26585)
DNA (1278bp) protein (426aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W693_9ACTO
UDP-N-acetylenolpyruvoylglucosamine reductase
L3_072_000G1_scaffold_456_22
Kytococcus sedentarius, Kytococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26675..26773)
DNA (99bp) protein (33aa)
Uncharacterized protein n=12 Tax=Actinomycetales RepID=C5CCT2_MICLC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV07407.1}; TaxID=478801 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Kytococcus.;" source="Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541); (Micrococcus sedentarius).;"
L3_072_000G1_scaffold_456_23
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26919..27158)
DNA (240bp) protein (80aa)
DNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 448 str. F0400 RepID=F9EES8_9ACTO
DNA binding protein {ECO:0000313|EMBL:ETJ07120.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
hypothetical protein
L3_072_000G1_scaffold_456_24
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27390..28955
DNA (1566bp) protein (522aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
Cation transport protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W690_9ACTO
Cation transport protein {ECO:0000313|EMBL:EEH65784.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
L3_072_000G1_scaffold_456_25
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29008..29676
DNA (669bp) protein (223aa)
TrkA N-terminal domain protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W689_9ACTO
Trk family potassium (K+) transporter, NAD+ binding protein {ECO:0000313|EMBL:ETJ06942.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
TrkA-N domain-containing protein
L3_072_000G1_scaffold_456_26
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29810..32875)
DNA (3066bp) protein (1022aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Beta galactosidase small chain n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W688_9ACTO
glycoside hydrolase family 2 TIM barrel
L3_072_000G1_scaffold_456_27
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32875..33687)
DNA (813bp) protein (271aa)
ABC transporter, permease protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W687_9ACTO
ABC transporter, permease protein {ECO:0000313|EMBL:EEH65781.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
lactose ABC transporter permease
L3_072_000G1_scaffold_456_28
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33680..34636)
DNA (957bp) protein (319aa)
ABC transporter, permease protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W686_9ACTO
ABC transporter, permease protein {ECO:0000313|EMBL:EEH65780.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
lactose ABC transporter permease
L3_072_000G1_scaffold_456_29
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34739..36049)
DNA (1311bp) protein (437aa)
ABC transporter, solute-binding protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W685_9ACTO
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGF04029.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
extracellular solute-binding protein family 1 protein
L3_072_000G1_scaffold_456_30
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36276..37307
DNA (1032bp) protein (344aa)
Transcriptional regulator, LacI family n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W684_9ACTO
LacI family transcriptional regulator {ECO:0000313|EMBL:KGF04028.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
LacI family transcriptional regulator
Displaying items 1-30 of 40 in total

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