ggKbase home page

L3_072_000G1_scaffold_467

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_467_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21..635)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U5N3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ57001.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_000G1_scaffold_467_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(848..2893)
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LTL1_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR33691.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_000G1_scaffold_467_3
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3111..4892)
DNA (1782bp) protein (594aa)
lipid A export ATP-binding/permease protein MsbA (EC:3.6.3.-)
ABC transporter n=1 Tax=Clostridium botulinum RepID=UPI00036DE801
ABC transporter {ECO:0000313|EMBL:KEZ87303.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
L3_072_000G1_scaffold_467_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4892..6619)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH55_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98594.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC transporter ATP-binding/permease
L3_072_000G1_scaffold_467_5
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7026..7799)
DNA (774bp) protein (258aa)
Radical SAM protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q5U8_9CLOT
Radical SAM protein {ECO:0000313|EMBL:ERK31504.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
L3_072_000G1_scaffold_467_6
unknown

Not on your lists

8029..8139
DNA (111bp) protein (37aa)

This feature has no annotations

L3_072_000G1_scaffold_467_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8229..9218)
DNA (990bp) protein (330aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M0A7_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:EHI98812.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
radical SAM domain protein
L3_072_000G1_scaffold_467_8
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9297..10703)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TTQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ50147.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_000G1_scaffold_467_9
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10729..12174)
DNA (1446bp) protein (482aa)
Glycine/D-amino acid oxidase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LPK4_9CLOT
glycine/D-amino acid oxidase
Glycine/D-amino acid oxidase {ECO:0000313|EMBL:AGF54760.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_000G1_scaffold_467_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12493..13056)
DNA (564bp) protein (188aa)
UPI0003A22A18 related cluster n=1 Tax=unknown RepID=UPI0003A22A18
Uncharacterized protein {ECO:0000313|EMBL:KHD16307.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
zinc dependent phospholipase C
L3_072_000G1_scaffold_467_11
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13346..13741)
DNA (396bp) protein (132aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5K8_9CLOT
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:EHJ00123.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
BadM/Rrf2 family transcriptional regulator
L3_072_000G1_scaffold_467_12
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13973..14725
DNA (753bp) protein (251aa)
FeS assembly ATPase SufC n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LUI9_CLOB8
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:ABR34019.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_000G1_scaffold_467_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14741..16150
DNA (1410bp) protein (470aa)
Fe-S cluster assembly protein SufB n=1 Tax=Clostridium beijerinckii RepID=UPI0002EF23F3
FeS assembly protein SufB {ECO:0000313|EMBL:AJG98607.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
FeS assembly protein SufB
L3_072_000G1_scaffold_467_14
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16160..17260
DNA (1101bp) protein (367aa)
FeS assembly protein SufD n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5K5_9CLOT
FeS assembly protein SufD {ECO:0000313|EMBL:EHJ00120.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
FeS assembly protein SufD
L3_072_000G1_scaffold_467_15
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17253..18482
DNA (1230bp) protein (410aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Cysteine desulfurase, SufS subfamily n=1 Tax=Clostridium sp. DL-VIII RepID=G7M5K4_9CLOT
SufS subfamily cysteine desulfurase
L3_072_000G1_scaffold_467_16
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18489..18917
DNA (429bp) protein (143aa)
SUF system FeS assembly protein, NifU family n=2 Tax=Clostridium RepID=A6LUJ3_CLOB8
NifU family SUF system FeS assembly protein
NifU-like protein NifU {ECO:0000313|EMBL:AJG98610.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_072_000G1_scaffold_467_17
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19136..19990
DNA (855bp) protein (285aa)
AraC family bacterial regulatory protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6LLR3_9CLOT
AraC family bacterial regulatory protein {ECO:0000313|EMBL:CDB75027.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
msmR1; Msm operon regulatory protein MsmR
L3_072_000G1_scaffold_467_18
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20115..22304)
DNA (2190bp) protein (730aa)
aga; alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CER7_9CLOT
Alpha-galactosidase {ECO:0000313|EMBL:EOR27787.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
L3_072_000G1_scaffold_467_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22657..23472)
DNA (816bp) protein (272aa)
Alpha/beta superfamily hydrolase n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F5D7_CLOSG
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:AJD30453.1}; TaxID=1408284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum Prevot_594.;"
alpha/beta superfamily hydrolase
L3_072_000G1_scaffold_467_20
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23601..24413)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8F3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98955.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L3_072_000G1_scaffold_467_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24773..25885
DNA (1113bp) protein (371aa)
cold-shock deAd box protein a (EC:3.6.1.-)
RNA helicase n=1 Tax=Clostridium botulinum RepID=UPI000306C64C
Uncharacterized protein {ECO:0000313|EMBL:AIY82107.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_072_000G1_scaffold_467_22
unknown

Not on your lists

comp(26008..26676)
DNA (669bp) protein (223aa)

This feature has no annotations

L3_072_000G1_scaffold_467_23
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26792..28387)
DNA (1596bp) protein (532aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N8D3_CLOK5
Membrane protein {ECO:0000313|EMBL:KGK86746.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
hypothetical protein
L3_072_000G1_scaffold_467_24
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28392..29174)
DNA (783bp) protein (261aa)
ABC transporter related protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWK6_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:EET86359.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
ABC transporter related protein
L3_072_000G1_scaffold_467_25
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29320..30753)
DNA (1434bp) protein (478aa)
Cardiolipin synthase {ECO:0000256|HAMAP-Rule:MF_01916}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_01916};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_01916};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
Cardiolipin synthase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G1Q1_9CLOT
clsC; cardiolipin synthetase
L3_072_000G1_scaffold_467_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30862..32037)
DNA (1176bp) protein (392aa)
Methyltransferase n=2 Tax=Clostridium butyricum RepID=B1QXM4_CLOBU
Putative RNA methylase {ECO:0000313|EMBL:EEP53919.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
methyltransferase
L3_072_000G1_scaffold_467_27
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32819..33691)
DNA (873bp) protein (291aa)
Cation efflux rotein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CE13_9CLOT
Cation efflux rotein {ECO:0000313|EMBL:EOR27255.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
cation diffusion facilitator family transporter
L3_072_000G1_scaffold_467_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34070..35512)
DNA (1443bp) protein (481aa)
dbpA; ATP-dependent RNA helicase DbpA (EC:3.6.4.13)
ATP-dependent RNA helicase DbpA {ECO:0000256|HAMAP-Rule:MF_00965}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00965};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
ATP-dependent RNA helicase DbpA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTH4_CLOSA
L3_072_000G1_scaffold_467_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35678..36607)
DNA (930bp) protein (310aa)
NAD-dependent epimerase/dehydratase family protein (EC:4.2.1.46)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YYM9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ32701.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L3_072_000G1_scaffold_467_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36809..37285)
DNA (477bp) protein (159aa)
Putative membrane protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JAZ4_CLOBU
Putative membrane protein {ECO:0000313|EMBL:KJZ86422.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative membrane protein
Displaying items 1-30 of 41 in total

View Taxonomy