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L3_072_000G1_scaffold_490

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_490_1
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(395..985)
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=219334 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei subsp. casei ATCC 393.;"
ATP-dependent Clp protease proteolytic subunit n=13 Tax=Lactobacillus RepID=B5QKC3_LACRH
clpP; ATP-dependent Clp protease proteolytic subunit
L3_072_000G1_scaffold_490_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1105..1560)
DNA (456bp) protein (152aa)
Transcriptional regulator n=9 Tax=Lactobacillus rhamnosus RepID=B5QKC2_LACRH
marR family protein
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEN80804.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_490_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1851..2798)
DNA (948bp) protein (316aa)
Putative sporulation transcription regulator WhiA n=11 Tax=Lactobacillus rhamnosus RepID=B5QKC1_LACRH
sporulation Regulator WhiA C terminal domain protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_490_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2803..3831)
DNA (1029bp) protein (343aa)
Putative gluconeogenesis factor n=4 Tax=Lactobacillus rhamnosus RepID=C7THY6_LACRL
yvcK; transporter
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3828..4715)
DNA (888bp) protein (296aa)
UPF0042 nucleotide-binding protein LRH_05259 n=10 Tax=Lactobacillus rhamnosus RepID=B5QKB9_LACRH
P-loop ATPase family protein
Nucleotide-binding protein LaR308_02435 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5112..5651)
DNA (540bp) protein (180aa)
Integral membrane protein n=7 Tax=Lactobacillus rhamnosus RepID=C7THY3_LACRL
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:EKS51632.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_490_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5854..8748)
DNA (2895bp) protein (965aa)
UvrABC system protein A n=4 Tax=Lactobacillus rhamnosus RepID=C7THY2_LACRL
uvrA; excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8929..10944)
DNA (2016bp) protein (672aa)
UvrABC system protein B n=12 Tax=Lactobacillus rhamnosus RepID=C7TB25_LACRG
uvrB; excinuclease ABC subunit B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_490_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11337..11984)
DNA (648bp) protein (216aa)
Hydrolase of the HAD superfamily n=5 Tax=Lactobacillus rhamnosus RepID=C7THY0_LACRL
HAD superfamily hydrolase
Nucleotidase YfbR, HD superfamily {ECO:0000313|EMBL:AGP73636.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12571..14037)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=3 Tax=Lactobacillus rhamnosus RepID=C7THX9_LACRL
hypothetical protein
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEN80871.1}; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
L3_072_000G1_scaffold_490_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14044..14940)
DNA (897bp) protein (299aa)
Uncharacterized protein n=3 Tax=Lactobacillus rhamnosus RepID=C7THX8_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS51626.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_490_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14942..15607)
DNA (666bp) protein (222aa)
ABC transporter, ATPase component n=5 Tax=Lactobacillus rhamnosus RepID=C7THX7_LACRL
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AGP73634.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15707..16717)
DNA (1011bp) protein (337aa)
Two component sensor transduction histidine kinase n=4 Tax=Lactobacillus rhamnosus RepID=C7THX6_LACRL
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73633.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16710..17357)
DNA (648bp) protein (216aa)
Two-component response regulator n=5 Tax=Lactobacillus rhamnosus RepID=C7THX5_LACRL
transcriptional regulatory, C terminal family protein
Transcriptional regulator {ECO:0000313|EMBL:KIC98787.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17620..19347)
DNA (1728bp) protein (576aa)
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II {ECO:0000313|EMBL:EEN80865.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EEN80865.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Phosphoglucomutase n=5 Tax=Lactobacillus rhamnosus RepID=C7THX4_LACRL
pgm; phosphoglucomutase
L3_072_000G1_scaffold_490_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19599..20546)
DNA (948bp) protein (316aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Thioredoxin reductase n=8 Tax=Lactobacillus rhamnosus RepID=B5QKB0_LACRH
thioredoxin reductase
L3_072_000G1_scaffold_490_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20612..21667)
DNA (1056bp) protein (352aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=2 Tax=Lactobacillus rhamnosus RepID=C7THX2_LACRL
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
L3_072_000G1_scaffold_490_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21678..22505)
DNA (828bp) protein (276aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Prolipoprotein diacylglyceryl transferase n=11 Tax=Lactobacillus rhamnosus RepID=B5QKA7_LACRH
lgt; prolipoprotein diacylglyceryl transferase
L3_072_000G1_scaffold_490_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22507..23466)
DNA (960bp) protein (320aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
HPr kinase/phosphorylase n=13 Tax=Lactobacillus rhamnosus RepID=B5QKA6_LACRH
hprK; HPr kinase/phosphorylase
L3_072_000G1_scaffold_490_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23734..24069)
DNA (336bp) protein (112aa)
Predicted membrane protein n=11 Tax=Lactobacillus rhamnosus RepID=B5QKA5_LACRH
membrane protein
Conserved membrane protein {ECO:0000313|EMBL:CAR86811.1}; Uncharacterized protein {ECO:0000313|EMBL:BAI41400.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_490_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24072..24332)
DNA (261bp) protein (87aa)
Conserved protein n=6 Tax=Lactobacillus rhamnosus RepID=C7TB17_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73625.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24344..25834)
DNA (1491bp) protein (497aa)
Conserved protein n=5 Tax=Lactobacillus RepID=C7THW7_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73624.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26541..27218)
DNA (678bp) protein (226aa)
Phosphate-specific transport system accessory protein PhoU n=13 Tax=Lactobacillus rhamnosus RepID=B5QKA1_LACRH
phoU; phosphate transport system regulatory protein phoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27229..27993)
DNA (765bp) protein (255aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
ABC-type phosphate transport system, ATPase component n=9 Tax=Lactobacillus rhamnosus RepID=B5QKA0_LACRH
phosphate ABC transporter ATP-binding protein
L3_072_000G1_scaffold_490_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28003..28821)
DNA (819bp) protein (273aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
ABC transporter, phosphate transporter ATPase component n=4 Tax=Lactobacillus rhamnosus RepID=C7THW4_LACRL
pstB; phosphate transporter ATP-binding protein
L3_072_000G1_scaffold_490_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28892..29776)
DNA (885bp) protein (295aa)
ABC-type phosphate transport system, permease component n=10 Tax=Lactobacillus rhamnosus RepID=B5QK98_LACRH
pstA; phosphate ABC transporter permease PstA
Phosphate ABC transporter permease {ECO:0000313|EMBL:KIC98775.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_490_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29773..30696)
DNA (924bp) protein (308aa)
ABC-type phosphate transport system, permease component n=12 Tax=Lactobacillus rhamnosus RepID=B5QK97_LACRH
pstC; phosphate ABC transporter permease
ABC transporter, phosphate transporter permease protein {ECO:0000313|EMBL:CAR86802.1}; Phosphate ABC transporter permease {ECO:0000313|EMBL:BAI41391.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_490_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30844..31710)
DNA (867bp) protein (289aa)
ABC transporter, phosphate-binding protein n=5 Tax=Lactobacillus rhamnosus RepID=C7THW1_LACRL
pstS; phosphate binding family protein
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:AGP73618.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_490_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31800..33467)
DNA (1668bp) protein (556aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Two component sensor transduction histidine kinase n=4 Tax=Lactobacillus rhamnosus RepID=C7THW0_LACRL
his kinase A domain protein
L3_072_000G1_scaffold_490_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33460..34164)
DNA (705bp) protein (235aa)
Two-component response regulator n=11 Tax=Lactobacillus rhamnosus RepID=C7TB06_LACRG
phoP; alkaline phosphatase synthesis transcriptional regulatory protein phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AGP73616.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Displaying items 1-30 of 40 in total

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