ggKbase home page

L3_072_000G1_scaffold_504

Search features with annotation key words

Displaying items 1-30 of 201 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_504_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..363)
DNA (363bp) protein (121aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Argininosuccinate synthase n=8 Tax=Bifidobacterium RepID=E3ER30_BIFBS
L3_072_000G1_scaffold_504_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(468..986)
DNA (519bp) protein (173aa)
Arginine repressor n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VA91_BIFBI
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
argR; Arginine repressor, ArgR
L3_072_000G1_scaffold_504_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1059..1886)
DNA (828bp) protein (276aa)
argF; ornithine carbamoyl transferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ornithine carbamoyltransferase n=5 Tax=Bifidobacterium bifidum RepID=E3ER32_BIFBS
L3_072_000G1_scaffold_504_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2017..3306)
DNA (1290bp) protein (430aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Acetylornithine aminotransferase n=4 Tax=Bifidobacterium RepID=E3ER33_BIFBS
argD; acetylornithine aminotransferase
L3_072_000G1_scaffold_504_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3296..4252)
DNA (957bp) protein (319aa)
argB; acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Acetylglutamate kinase n=7 Tax=Bifidobacterium RepID=E3ER34_BIFBS
L3_072_000G1_scaffold_504_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4312..5481)
DNA (1170bp) protein (390aa)
argJ; arginine biosynthesis bifunctional protein (EC:2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=3 Tax=Bifidobacterium bifidum RepID=E4VA96_BIFBI
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_000G1_scaffold_504_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5478..6572)
DNA (1095bp) protein (365aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER36_BIFBS
argC; N-acetyl-gamma-glutamyl-phosphate reductase
L3_072_000G1_scaffold_504_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6675..7328)
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DVG0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43189.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_072_000G1_scaffold_504_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7363..9972)
DNA (2610bp) protein (870aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Bifidobacterium bifidum RepID=K2I6F6_BIFBI
L3_072_000G1_scaffold_504_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9980..11047)
DNA (1068bp) protein (356aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phenylalanine--tRNA ligase alpha subunit n=8 Tax=Bifidobacterium RepID=E3ER39_BIFBS
pheS; phenylalanyl-tRNA synthetase subunit alpha
L3_072_000G1_scaffold_504_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11132..11971)
DNA (840bp) protein (280aa)
rRNA methylase n=3 Tax=Bifidobacterium RepID=R6HAM9_9BIFI
rRNA methylase {ECO:0000313|EMBL:CDB23272.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
rRNA methylase
L3_072_000G1_scaffold_504_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12141..12902
DNA (762bp) protein (254aa)
ABC transporter ATP-binding protein (EC:3.6.3.42)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXF4_BIFBP
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04687.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_000G1_scaffold_504_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12899..13690
DNA (792bp) protein (264aa)
TIGR00245 family protein n=3 Tax=Bifidobacterium bifidum RepID=E4VAA4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16258.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_072_000G1_scaffold_504_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13751..14020)
DNA (270bp) protein (90aa)
Possible short-chain alcohol dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER43_BIFBS
short-chain alcohol dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:EFR50547.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_072_000G1_scaffold_504_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14120..14296)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSL3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50428.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_072_000G1_scaffold_504_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14539..15000
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=I3WIH8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23267.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_000G1_scaffold_504_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15132..16421)
DNA (1290bp) protein (430aa)
Putative pyrimidine permease n=2 Tax=Bifidobacterium RepID=I3WIH9_BIFBI
rutG; putative pyrimidine permease
Putative pyrimidine permease {ECO:0000313|EMBL:CDB23266.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_072_000G1_scaffold_504_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16579..17391)
DNA (813bp) protein (271aa)
Phosphoglycerate mutase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WII0_BIFBI
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:AFL04693.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_000G1_scaffold_504_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17866..18960)
DNA (1095bp) protein (365aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER49_BIFBS
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB23263.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_072_000G1_scaffold_504_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19179..19994)
DNA (816bp) protein (272aa)
HTH-type transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WII4_BIFBI
ywfK; HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:AFL04697.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_072_000G1_scaffold_504_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20079..20717)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VAB2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50554.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_072_000G1_scaffold_504_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20759..22363)
DNA (1605bp) protein (535aa)
Family 2 glycosyl transferase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2INT3_BIFBI
Family 2 glycosyl transferase {ECO:0000313|EMBL:EKE50420.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
family 2 glycosyl transferase
L3_072_000G1_scaffold_504_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22634..23278
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2ME30_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15552.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_072_000G1_scaffold_504_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23410..25746
DNA (2337bp) protein (779aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAB6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50558.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_072_000G1_scaffold_504_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25758..26405)
DNA (648bp) protein (216aa)
Phospholipase/carboxylesterase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NXG5_BIFBP
phospholipase/carboxylesterase
Phospholipase/carboxylesterase {ECO:0000313|EMBL:EKE50418.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_072_000G1_scaffold_504_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26784..27209
DNA (426bp) protein (142aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=7 Tax=Bifidobacterium RepID=E3ER56_BIFBS
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_072_000G1_scaffold_504_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27281..27631)
DNA (351bp) protein (117aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2H8T9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15556.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_072_000G1_scaffold_504_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27765..27974)
DNA (210bp) protein (70aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=E4VAC0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83786.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_072_000G1_scaffold_504_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28430..28798)
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2C006_BIFBI
Putative Zn-dependent protease {ECO:0000313|EMBL:EKE50414.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Zn-dependent protease
L3_072_000G1_scaffold_504_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29003..29590
DNA (588bp) protein (196aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=U2CGX8_BIFBI
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ERI83790.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 201 in total

View Taxonomy