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L3_072_000G1_scaffold_505

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_505_1
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(152..1540)
DNA (1389bp) protein (463aa)
DSBA oxidoreductase n=3 Tax=Lactobacillus fermentum RepID=V4XJX2_LACFE
DSBA oxidoreductase {ECO:0000313|EMBL:ESS00416.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
multidrug transport protein
L3_072_000G1_scaffold_505_2
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1655..2620)
DNA (966bp) protein (322aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
Riboflavin biosynthesis protein n=3 Tax=Lactobacillus fermentum RepID=B2GBP0_LACF3
riboflavin biosynthesis protein
L3_072_000G1_scaffold_505_3
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2631..3590)
DNA (960bp) protein (320aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
tRNA pseudouridine synthase B n=2 Tax=Lactobacillus fermentum RepID=C0WXG8_LACFE
truB; tRNA pseudouridine synthase B
L3_072_000G1_scaffold_505_4
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3597..3959)
DNA (363bp) protein (121aa)
Ribosome-binding factor A n=6 Tax=Lactobacillus fermentum RepID=RBFA_LACF3
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_505_5
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3972..6299)
DNA (2328bp) protein (776aa)
Translation initiation factor IF-2 n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RW53_LACFE
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
infB; Translation initiation factor IF-2
L3_072_000G1_scaffold_505_6
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(6304..6627)
DNA (324bp) protein (108aa)
Ribosomal protein L7/L12 n=6 Tax=Lactobacillus fermentum RepID=R4RSF2_LACFE
Ribosomal protein L7/L12
Uncharacterized protein {ECO:0000313|EMBL:KJY06487.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
L3_072_000G1_scaffold_505_7
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6620..6922)
DNA (303bp) protein (101aa)
Nucleic-acid-binding protein implicated in transcription termination n=5 Tax=Lactobacillus fermentum RepID=R4RJU2_LACFE
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAG27067.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_505_8
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6959..8185)
DNA (1227bp) protein (409aa)
Transcription termination-antitermination factor NusA n=4 Tax=Lactobacillus fermentum RepID=B2GBN4_LACF3
transcription termination-antitermination factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
L3_072_000G1_scaffold_505_9
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8205..8684)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimP n=7 Tax=Lactobacillus fermentum RepID=RIMP_LACF3
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
L3_072_000G1_scaffold_505_10
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8837..11926)
DNA (3090bp) protein (1030aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RW48_LACFE
Carbamoyl-phosphate synthase large subunit
L3_072_000G1_scaffold_505_11
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11919..12989)
DNA (1071bp) protein (357aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=712938 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain CECT 5716).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Lactobacillus fermentum (strain CECT 5716) RepID=D8IHH6_LACFC
carbamoyl-phosphate synthase small subunit
L3_072_000G1_scaffold_505_12
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13234..14259
DNA (1026bp) protein (342aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RJT9_LACFE
argC; N-acetyl-gamma-glutamyl-phosphate reductase
L3_072_000G1_scaffold_505_13
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14286..15488
DNA (1203bp) protein (401aa)
Arginine biosynthesis bifunctional protein ArgJ n=3 Tax=Lactobacillus fermentum RepID=D0DQV7_LACFE
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
argJ; Glutamate N-acetyltransferase
L3_072_000G1_scaffold_505_14
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15498..16244
DNA (747bp) protein (249aa)
Acetylglutamate kinase n=2 Tax=Lactobacillus fermentum RepID=B2GBM8_LACF3
Acetylglutamate kinase
Acetylglutamate kinase {ECO:0000313|EMBL:BAG27060.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_505_15
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16257..17408
DNA (1152bp) protein (384aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DQV9_LACFE
L3_072_000G1_scaffold_505_16
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17531..21874)
DNA (4344bp) protein (1448aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356, ECO:0000256|SAAS:SAAS00057170};; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
DNA polymerase III polC-type n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RSE5_LACFE
polC; DNA-directed DNA polymerase III alpha subunit
L3_072_000G1_scaffold_505_17
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(22014..23735)
DNA (1722bp) protein (574aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Proline--tRNA ligase n=2 Tax=Lactobacillus fermentum RepID=R4RJT5_LACFE
Proline--tRNA ligase
L3_072_000G1_scaffold_505_18
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23769..25040)
DNA (1272bp) protein (424aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=712938 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain CECT 5716).;"
Zinc metalloprotease n=1 Tax=Lactobacillus fermentum (strain CECT 5716) RepID=D8IHH2_LACFC
zinc metalloprotease
L3_072_000G1_scaffold_505_19
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25062..25850)
DNA (789bp) protein (263aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
Phosphatidate cytidylyltransferase n=2 Tax=Lactobacillus fermentum RepID=B2GBM3_LACF3
Phosphatidate cytidylyltransferase
L3_072_000G1_scaffold_505_20
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25867..26634)
DNA (768bp) protein (256aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
Isoprenyl transferase n=2 Tax=Lactobacillus fermentum RepID=B2GBM2_LACF3
undecaprenyl diphosphate synthase
L3_072_000G1_scaffold_505_21
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26767..27327)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=4 Tax=Lactobacillus fermentum RepID=B2GBM1_LACF3
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
L3_072_000G1_scaffold_505_22
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27327..28052)
DNA (726bp) protein (242aa)
UMP kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
Uridylate kinase n=4 Tax=Lactobacillus fermentum RepID=B2GBM0_LACF3
L3_072_000G1_scaffold_505_23
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28132..29010)
DNA (879bp) protein (293aa)
Elongation factor Ts n=5 Tax=Lactobacillus fermentum RepID=EFTS_LACF3
elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_505_24
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(29101..29880)
DNA (780bp) protein (260aa)
30S ribosomal protein S2 n=6 Tax=Lactobacillus fermentum RepID=RS2_LACF3
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_505_25
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30034..30324)
DNA (291bp) protein (97aa)
Endonuclease n=3 Tax=Lactobacillus fermentum RepID=R4RW34_LACFE
Endonuclease
GIY-YIG catalytic domain protein {ECO:0000313|EMBL:EEI22238.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_505_26
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30317..31069)
DNA (753bp) protein (251aa)
Methyltransferase n=5 Tax=Lactobacillus fermentum RepID=R4RSD8_LACFE
Methyltransferase
Methyltransferase {ECO:0000313|EMBL:AGL88627.1}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
L3_072_000G1_scaffold_505_27
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31165..31797
DNA (633bp) protein (211aa)
1-acylglycerol-3-phosphate O-acyltransferase n=6 Tax=Lactobacillus fermentum RepID=B2GBL5_LACF3
1-acylglycerol-3-phosphate O-acyltransferase
Acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:KIL02095.1}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_505_28
Lactobacillus casei, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31865..32092)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Lactobacillus fermentum RepID=R4RH32_LACFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGP68587.1}; TaxID=1582 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus casei.;"
L3_072_000G1_scaffold_505_29
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(32169..32420)
DNA (252bp) protein (84aa)
UPF0291 protein LAF_0709 n=5 Tax=Lactobacillus fermentum RepID=B2GBL3_LACF3
hypothetical protein
UPF0291 protein N573_02445 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
L3_072_000G1_scaffold_505_30
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32576..33202
DNA (627bp) protein (209aa)
LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
LexA repressor n=8 Tax=Lactobacillus fermentum RepID=LEXA_LACF3
Displaying items 1-30 of 42 in total

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