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L3_072_000G1_scaffold_519

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_519_1
unknown

Not on your lists

1..72
DNA (72bp) protein (24aa)

This feature has no annotations

L3_072_000G1_scaffold_519_2
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

612..1103
DNA (492bp) protein (164aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CKT0_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:ERI69837.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_072_000G1_scaffold_519_3
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1100..1615
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG56913.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L3_072_000G1_scaffold_519_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1724..2935
DNA (1212bp) protein (404aa)
FliB family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V139_CLOBA
FliB family protein
FliB family protein {ECO:0000313|EMBL:EES48335.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_072_000G1_scaffold_519_5
unknown

Not on your lists

3106..3300
DNA (195bp) protein (65aa)

This feature has no annotations

L3_072_000G1_scaffold_519_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3394..4005
DNA (612bp) protein (204aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=M8JBU4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ33261.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_072_000G1_scaffold_519_7
unknown

Not on your lists

4014..4181
DNA (168bp) protein (56aa)

This feature has no annotations

L3_072_000G1_scaffold_519_8
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4448..5626
DNA (1179bp) protein (393aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QLK8_9CLOT
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EKY28806.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L3_072_000G1_scaffold_519_9
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5673..6158)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E3012E
Uncharacterized protein {ECO:0000313|EMBL:EOS74642.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_072_000G1_scaffold_519_10
unknown

Not on your lists

6323..6499
DNA (177bp) protein (59aa)

This feature has no annotations

L3_072_000G1_scaffold_519_11
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6650..7519
DNA (870bp) protein (290aa)
Putative Fe-S oxidoreductase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBG1_9CLOT
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:EKQ56999.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
putative Fe-S oxidoreductase
L3_072_000G1_scaffold_519_12
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7572..8174
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRP2_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:AJG98347.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_072_000G1_scaffold_519_13
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8514..9110
DNA (597bp) protein (199aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridium sp. DL-VIII RepID=G7M0N2_9CLOT
ruvA; Holliday junction DNA helicase RuvA
L3_072_000G1_scaffold_519_14
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9324..10361
DNA (1038bp) protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBG0_9CLOT
ruvB; Holliday junction DNA helicase RuvB
L3_072_000G1_scaffold_519_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10489..11514
DNA (1026bp) protein (342aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA (EC:2.4.99.17)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTC0_CLOSA
L3_072_000G1_scaffold_519_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11829..12965
DNA (1137bp) protein (379aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase n=1 Tax=Clostridium botulinum RepID=UPI0002D83A6C
L3_072_000G1_scaffold_519_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13248..13526
DNA (279bp) protein (93aa)
Preprotein translocase, YajC subunit n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U5M6_9CLOT
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EKQ56991.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
preprotein translocase, YajC subunit
L3_072_000G1_scaffold_519_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13588..13956
DNA (369bp) protein (123aa)
Putative membrane protein, TIGR04086 family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TW41_9CLOT
Putative membrane protein, TIGR04086 family {ECO:0000313|EMBL:EKQ56990.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
membrane protein
L3_072_000G1_scaffold_519_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14295..16430
DNA (2136bp) protein (712aa)
Protein export protein SecD n=2 Tax=Clostridium botulinum B RepID=B2TMZ7_CLOBB
protein export protein SecD
Protein export protein SecD {ECO:0000313|EMBL:ACD22696.1}; Protein-export membrane protein SecD (TC 3.A.5.1.1) {ECO:0000313|EMBL:CDH89950.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_072_000G1_scaffold_519_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16545..17426
DNA (882bp) protein (294aa)
recJ1; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:AGX43839.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX43839.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSS6_CLOSA
L3_072_000G1_scaffold_519_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17485..18003
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1QTX4_CLOBU
L3_072_000G1_scaffold_519_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18294..20507
DNA (2214bp) protein (738aa)
GTP pyrophosphokinase RelA {ECO:0000313|EMBL:AGX43837.1}; EC=2.7.6.5 {ECO:0000313|EMBL:AGX43837.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
relA; GTP pyrophosphokinase RelA (EC:2.7.6.5)
GTP pyrophosphokinase RelA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MWJ8_CLOSA
L3_072_000G1_scaffold_519_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20544..20993
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
UPI0003D65F88 related cluster n=1 Tax=unknown RepID=UPI0003D65F88
D-tyrosyl-tRNA(Tyr) deacylase
L3_072_000G1_scaffold_519_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21015..21623
DNA (609bp) protein (203aa)
Metallo-beta-lactamase family protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYU2_CLOBO
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:EES49157.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
metallo-beta-lactamase family protein
L3_072_000G1_scaffold_519_25
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21701..23128
DNA (1428bp) protein (476aa)
hemZ; oxygen-independent coproporphyrinogen-III oxidase 2 (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen-III oxidase 2 {ECO:0000313|EMBL:AGF56334.1}; EC=1.3.99.22 {ECO:0000313|EMBL:AGF56334.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Oxygen-independent coproporphyrinogen-III oxidase 2 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MEJ2_9CLOT
L3_072_000G1_scaffold_519_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23325..24578
DNA (1254bp) protein (418aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hisS; histidine--tRNA ligase HisS (EC:6.1.1.21)
Histidine--tRNA ligase n=3 Tax=Clostridium butyricum RepID=B1R2Q6_CLOBU
L3_072_000G1_scaffold_519_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24712..26511
DNA (1800bp) protein (600aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
UPI0003D5BC2C related cluster n=1 Tax=unknown RepID=UPI0003D5BC2C
Aspartate-tRNA ligase {ECO:0000313|EMBL:ETI91045.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L3_072_000G1_scaffold_519_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26633..27568)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ALU8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ33729.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
L3_072_000G1_scaffold_519_29
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27694..28392)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MSH2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF57666.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_000G1_scaffold_519_30
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(28459..29145)
DNA (687bp) protein (229aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. DL-VIII RepID=G7M0H1_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
rpsD2; 30S ribosomal protein S4 B
Displaying items 1-30 of 47 in total

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