ggKbase home page

L3_072_000G1_scaffold_526

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_526_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(239..874)
DNA (636bp) protein (212aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
thiE1; thiamine-phosphate synthase ThiE (EC:2.5.1.3)
UPI0003D619C5 related cluster n=1 Tax=unknown RepID=UPI0003D619C5
L3_072_000G1_scaffold_526_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1098..1928)
DNA (831bp) protein (277aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
thiM; hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXN8_CLOBO
L3_072_000G1_scaffold_526_3
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1991..3307)
DNA (1317bp) protein (439aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
thiC; phosphomethylpyrimidine synthase ThiC (EC:4.1.99.17)
Phosphomethylpyrimidine synthase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY25_9CLOT
L3_072_000G1_scaffold_526_4
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3420..4205)
DNA (786bp) protein (262aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EHI97848.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EHI97848.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ThiD (EC:2.7.1.49 2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY24_9CLOT
L3_072_000G1_scaffold_526_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4244..4768)
DNA (525bp) protein (175aa)
UPI0003D65D36 related cluster n=1 Tax=unknown RepID=UPI0003D65D36
ThiW protein {ECO:0000313|EMBL:KHD16445.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
thiW; ThiW protein
L3_072_000G1_scaffold_526_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5038..5922)
DNA (885bp) protein (295aa)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:AIY81158.1}; EC=4.3.1.17 {ECO:0000313|EMBL:AIY81158.1};; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
sdaAA; L-serine dehydratase, iron-sulfur-dependent subunit alpha (EC:4.3.1.17)
serine dehydratase subunit alpha n=1 Tax=Clostridium botulinum RepID=UPI0002D96842
L3_072_000G1_scaffold_526_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5999..6676)
DNA (678bp) protein (226aa)
sdhB; L-serine dehydratase, beta chain (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=3 Tax=Clostridium butyricum RepID=B1QZA8_CLOBU
Transcriptional regulator, AraC family {ECO:0000313|EMBL:KJZ95490.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L3_072_000G1_scaffold_526_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7058..8323)
DNA (1266bp) protein (422aa)
PTS system, N-acetylglucosamine-specific IIBC subunit n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M211_CLOB8
PTS system N-acetylglucosamine-specific transporter subunit IIBC
PTS system, N-acetylglucosamine-specific IIBC subunit {ECO:0000313|EMBL:ABR36641.1}; Flags: Precursor;; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_000G1_scaffold_526_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8368..8493)
DNA (126bp) protein (42aa)
PTS system, N-acetylglucosamine-specific IIBC subunit n=1 Tax=Clostridium sp. DL-VIII RepID=G7MCB8_9CLOT
PTS system, N-acetylglucosamine-specific IIBC subunit {ECO:0000313|EMBL:EHI97793.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PTS system, N-acetylglucosamine-specific IIBC subunit
L3_072_000G1_scaffold_526_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8701..9588)
DNA (888bp) protein (296aa)
Levansucrase and sucrase synthesis operon antiterminator n=2 Tax=Clostridium butyricum RepID=B1QZA6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86063.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
transcriptional antiterminator, BglG
L3_072_000G1_scaffold_526_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10000..11640)
DNA (1641bp) protein (547aa)
phosphoribulokinase/uridine kinase (EC:2.7.1.48)
Phosphoribulokinase/uridine kinase {ECO:0000313|EMBL:AGX41736.1}; EC=2.7.1.48 {ECO:0000313|EMBL:AGX41736.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Phosphoribulokinase/uridine kinase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPX0_CLOSA
L3_072_000G1_scaffold_526_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11830..12612
DNA (783bp) protein (261aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JD74_CLOBU
Membrane protein {ECO:0000313|EMBL:KHD16418.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_072_000G1_scaffold_526_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12609..12989
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JNM7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86013.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein DUF4363
L3_072_000G1_scaffold_526_14
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13319..14542
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Argininosuccinate synthase n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=ASSY_CLOB8
argininosuccinate synthase
L3_072_000G1_scaffold_526_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14545..15930
DNA (1386bp) protein (462aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
argH; argininosuccinate lyase ArgH (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TV33_9CLOT
L3_072_000G1_scaffold_526_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16083..17117
DNA (1035bp) protein (345aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase ArgC (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=2 Tax=Clostridium butyricum RepID=B1QZA0_CLOBU
L3_072_000G1_scaffold_526_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17215..17574
DNA (360bp) protein (120aa)
TIGR02436 family protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T9H8_9CLOT
TIGR02436 family protein {ECO:0000313|EMBL:EKQ56533.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L3_072_000G1_scaffold_526_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17663..18886
DNA (1224bp) protein (408aa)
argJ; argJ1: arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMA4_CLOSA
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_072_000G1_scaffold_526_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19004..19864
DNA (861bp) protein (287aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
acetylglutamate kinase n=1 Tax=Clostridium beijerinckii RepID=UPI000375ECF8
acetylglutamate kinase
L3_072_000G1_scaffold_526_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20057..21235
DNA (1179bp) protein (393aa)
argD; acetylornithine aminotransferase ArgD (EC:2.6.1.11)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Acetylornithine aminotransferase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MMH2_CLOSA
L3_072_000G1_scaffold_526_21
unknown

Not on your lists

21307..21567
DNA (261bp) protein (87aa)

This feature has no annotations

L3_072_000G1_scaffold_526_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21723..22643
DNA (921bp) protein (307aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
argF; ornithine carbamoyltransferase ArgF (EC:2.1.3.3)
UPI0003D67ED5 related cluster n=1 Tax=unknown RepID=UPI0003D67ED5
L3_072_000G1_scaffold_526_23
unknown

Not on your lists

23079..23345
DNA (267bp) protein (89aa)

This feature has no annotations

L3_072_000G1_scaffold_526_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23590..24561)
DNA (972bp) protein (324aa)
Oxidoreductase, aldo/keto reductase family n=2 Tax=Clostridium butyricum RepID=B1R295_CLOBU
L-glyceraldehyde 3-phosphate reductase {ECO:0000313|EMBL:KHD16213.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
Putative ion-channel protein
L3_072_000G1_scaffold_526_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24682..25575)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RN65_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75683.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
D-3-phosphoglycerate dehydrogenase
L3_072_000G1_scaffold_526_26
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25805..26842)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N6G9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF59007.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_000G1_scaffold_526_27
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27222..27779
DNA (558bp) protein (186aa)
Adenylate cyclase, class 2 (Thermophilic) n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TV13_9CLOT
Adenylate cyclase, class 2 (Thermophilic) {ECO:0000313|EMBL:EKQ56510.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
adenylate cyclase
L3_072_000G1_scaffold_526_28
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27907..29295)
DNA (1389bp) protein (463aa)
membrane protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002EE8BB1
Transporter protein {ECO:0000313|EMBL:AJG98666.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_072_000G1_scaffold_526_29
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29695..30528)
DNA (834bp) protein (278aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KEH5_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN36540.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
binding-protein-dependent transport systems inner membrane component
L3_072_000G1_scaffold_526_30
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30528..31484)
DNA (957bp) protein (319aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Paenibacillus sp. A9 RepID=UPI00036FA496
spermidine/putrescine ABC transporter permease
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:AHC21632.1}; TaxID=1429244 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa CR1.;"
Displaying items 1-30 of 41 in total

View Taxonomy