ggKbase home page

L3_072_000G1_scaffold_530

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_530_1
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..509
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:KEP24043.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
L3_072_000G1_scaffold_530_2
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(437..934)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L8_9ACTO
Flavodoxin {ECO:0000313|EMBL:ETJ07146.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
protoporphyrinogen oxidase
L3_072_000G1_scaffold_530_3
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1067..3724)
DNA (2658bp) protein (886aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Actinomyces massiliensis RepID=UPI00031AAC9E
phenylalanyl-tRNA synthetase subunit beta
L3_072_000G1_scaffold_530_4
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3726..4811)
DNA (1086bp) protein (362aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L5_9ACTO
phenylalanyl-tRNA synthetase subunit alpha
L3_072_000G1_scaffold_530_5
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4986..5729)
DNA (744bp) protein (248aa)
N-acetylglucosaminylphosphatidylinositol deacetylase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L4_9ACTO
N-acetylglucosaminylphosphatidylinositol deacetylase {ECO:0000313|EMBL:EEH65302.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
hypothetical protein
L3_072_000G1_scaffold_530_6
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5722..7086)
DNA (1365bp) protein (455aa)
Tat pathway signal sequence domain protein n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L3_9ACTO
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEH65301.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
sugar ABC transporter
L3_072_000G1_scaffold_530_7
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7201..8109)
DNA (909bp) protein (303aa)
ABC transporter, permease protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L2_9ACTO
ABC superfamily ATP binding cassette transporter, membrane protein {ECO:0000313|EMBL:ETJ07469.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
binding-protein-dependent transport system inner membrane protein
L3_072_000G1_scaffold_530_8
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8096..9043)
DNA (948bp) protein (316aa)
ABC transporter, permease protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L1_9ACTO
ABC transporter, permease protein {ECO:0000313|EMBL:EEH65299.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Putative sugar-transport integral membrane protein ABC transporter UspA
L3_072_000G1_scaffold_530_9
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9052..10017)
DNA (966bp) protein (322aa)
RNA methyltransferase, TrmH family n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7L0_9ACTO
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EEH65298.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
tRNA/rRNA methyltransferase SpoU
L3_072_000G1_scaffold_530_10
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10115..10495)
DNA (381bp) protein (127aa)
50S ribosomal protein L20 n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K9_9ACTO
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
50S ribosomal protein L20
L3_072_000G1_scaffold_530_11
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10523..10717)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K8_9ACTO
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
50S ribosomal protein L35
L3_072_000G1_scaffold_530_12
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10819..11403)
DNA (585bp) protein (195aa)
Translation initiation factor IF-3 n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K7_9ACTO
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
translation initiation factor IF-3
L3_072_000G1_scaffold_530_13
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11738..12496)
DNA (759bp) protein (253aa)
Uncharacterized protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EEH65293.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
hypothetical protein
L3_072_000G1_scaffold_530_14
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12493..13236)
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.24)
UPI0003D61C29 related cluster n=1 Tax=unknown RepID=UPI0003D61C29
L3_072_000G1_scaffold_530_15
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13272..13922)
DNA (651bp) protein (217aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K3_9ACTO
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
L3_072_000G1_scaffold_530_16
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13977..14675)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EEH65290.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
hypothetical protein
L3_072_000G1_scaffold_530_17
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14675..15274)
DNA (600bp) protein (200aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K1_9ACTO
L3_072_000G1_scaffold_530_18
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15271..16452)
DNA (1182bp) protein (394aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Histidinol-phosphate aminotransferase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7K0_9ACTO
histidinol-phosphate aminotransferase
L3_072_000G1_scaffold_530_19
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16525..18423)
DNA (1899bp) protein (633aa)
Transporter, CPA2 family n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J9_9ACTO
Transporter, CPA2 family {ECO:0000313|EMBL:EEH65287.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
monovalent cation/proton antiporter
L3_072_000G1_scaffold_530_20
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18515..19711)
DNA (1197bp) protein (399aa)
Methionine synthase, vitamin-B12 independent n=3 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J8_9ACTO
Methionine synthase {ECO:0000313|EMBL:KGF03450.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
methionine synthase
L3_072_000G1_scaffold_530_21
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20149..20922)
DNA (774bp) protein (258aa)
Transcriptional regulator, MarR family n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J7_9ACTO
Transcriptional regulator {ECO:0000313|EMBL:KGF03451.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
MarR family transcriptional regulator
L3_072_000G1_scaffold_530_22
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21038..23365
DNA (2328bp) protein (776aa)
ATP-dependent DNA helicase, RecQ family n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J6_9ACTO
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KGF03452.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
RecQ familyATP-dependent DNA helicase
L3_072_000G1_scaffold_530_23
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23426..24418
DNA (993bp) protein (331aa)
Putative magnesium and cobalt transport protein CorA n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J5_9ACTO
CorA family magnesium transport protein {ECO:0000313|EMBL:ETJ05660.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
metal ion transport protein
L3_072_000G1_scaffold_530_24
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24489..25856)
DNA (1368bp) protein (456aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|RuleBase:RU000580}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|RuleBase:RU000580};; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
Histidinol dehydrogenase n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J4_9ACTO
histidinol dehydrogenase
L3_072_000G1_scaffold_530_25
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25831..28224)
DNA (2394bp) protein (798aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J3_9ACTO
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EEH65281.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
glycoside hydrolase
L3_072_000G1_scaffold_530_26
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28309..29406
DNA (1098bp) protein (366aa)
ADP-ribosylglycohydrolase (Fragment) n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J2_9ACTO
Ribosylglycohydrolase {ECO:0000313|EMBL:KGF03455.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
ADP-ribosylation/Crystallin J1
L3_072_000G1_scaffold_530_27
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29403..29960)
DNA (558bp) protein (186aa)
Uncharacterized protein (Fragment) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7J1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGF03456.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
L3_072_000G1_scaffold_530_28
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29957..30880)
DNA (924bp) protein (308aa)
UPI0003D63BC1 related cluster n=1 Tax=unknown RepID=UPI0003D63BC1
Uncharacterized protein {ECO:0000313|EMBL:KGF03457.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
hypothetical protein
L3_072_000G1_scaffold_530_29
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31071..32057)
DNA (987bp) protein (329aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7I9_9ACTO
ATPase {ECO:0000313|EMBL:KGF03458.1}; TaxID=1284679 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis S6-C4.;"
ATPase
L3_072_000G1_scaffold_530_30
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32054..32527)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W7I8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EEH65328.1}; TaxID=525246 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DSM 15434.;"
hypothetical protein
Displaying items 1-30 of 41 in total

View Taxonomy