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L3_072_000G1_scaffold_628

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_628_1
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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876..1826
DNA (951bp) protein (317aa)
pyrB; Aspartate carbamoyltransferase (Aspartate transcarbamylase) (ATCase) (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=768728 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius ACS-116-V-Col5a.;"
Aspartate carbamoyltransferase n=3 Tax=Lactobacillus salivarius RepID=PYRB_LACS1
L3_072_000G1_scaffold_628_2
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1826..3115
DNA (1290bp) protein (430aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000255|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000255|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000255|HAMAP-Rule:MF_00220};; TaxID=362948 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius (strain UCC118).;"
Dihydroorotase n=1 Tax=Lactobacillus salivarius (strain UCC118) RepID=PYRC_LACS1
L3_072_000G1_scaffold_628_3
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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3115..4203
DNA (1089bp) protein (363aa)
carA; carbamoyl phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Lactobacillus salivarius (strain UCC118) RepID=Q1WVB0_LACS1
Carbamoyl phosphate synthase small subunit {ECO:0000313|EMBL:AKI03751.1}; TaxID=1194971 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius str. Ren.;"
L3_072_000G1_scaffold_628_4
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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4196..7381
DNA (3186bp) protein (1062aa)
carB; Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=2 Tax=Lactobacillus salivarius RepID=E1JKK5_9LACO
Carbamoyl phosphate synthase large subunit {ECO:0000313|EMBL:AKI03752.1}; TaxID=1194971 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius str. Ren.;"
L3_072_000G1_scaffold_628_5
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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7400..8344
DNA (945bp) protein (315aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1041521 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius GJ-24.;"
Dihydroorotate dehydrogenase n=1 Tax=Lactobacillus salivarius GJ-24 RepID=F7QRX6_9LACO
pyrD; dihydroorotate dehydrogenase 1B
L3_072_000G1_scaffold_628_6
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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8647..9114
DNA (468bp) protein (156aa)
Transcriptional regulator ctsR n=8 Tax=Lactobacillus salivarius RepID=D8IJR5_LACSC
transcriptional regulator CtsR
Transcriptional regulator CtsR {ECO:0000313|EMBL:CDK36019.1}; TaxID=1273133 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius cp400.;"
L3_072_000G1_scaffold_628_7
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9130..11622
DNA (2493bp) protein (831aa)
Negative regulator of genetic competence n=1 Tax=Lactobacillus salivarius SMXD51 RepID=H7FYN0_9LACO
Negative regulator of genetic competence {ECO:0000313|EMBL:EIA32630.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
clpC; negative regulator of genetic competence
L3_072_000G1_scaffold_628_8
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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11875..15465
DNA (3591bp) protein (1197aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=768728 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius ACS-116-V-Col5a.;"
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Lactobacillus salivarius RepID=E1JKK9_9LACO
L3_072_000G1_scaffold_628_9
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15494..19159
DNA (3666bp) protein (1222aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1029822 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius NIAS840.;"
rpoC; DNA-directed RNA polymerase beta' chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=6 Tax=Lactobacillus salivarius RepID=RPOC_LACS1
L3_072_000G1_scaffold_628_10
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(19205..19921)
DNA (717bp) protein (239aa)
pilD; Type IV prepilin leader peptidase (EC:3.4.99.-)
Late competence protein ComC, processing protease n=2 Tax=Lactobacillus salivarius RepID=F5VB95_9LACO
Late competence protein ComC, processing protease {ECO:0000313|EMBL:EGL98405.1}; TaxID=1029822 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius NIAS840.;"
L3_072_000G1_scaffold_628_11
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


20206..20619
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=8 Tax=Lactobacillus salivarius RepID=RS12_LACS1
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1029822 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius NIAS840.;"
L3_072_000G1_scaffold_628_12
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


20654..21124
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=7 Tax=Lactobacillus salivarius RepID=RS7_LACS1
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000313|EMBL:AKI03760.1}; TaxID=1194971 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius str. Ren.;"
L3_072_000G1_scaffold_628_13
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21245..23338
DNA (2094bp) protein (698aa)
Elongation factor G n=3 Tax=Lactobacillus salivarius RepID=C2EIA6_9LACO
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1029822 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius NIAS840.;"
efg; Protein Translation Elongation Factor G
L3_072_000G1_scaffold_628_14
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23443..24174
DNA (732bp) protein (244aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1624 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius.;"
NAD-dependent protein deacetylase n=4 Tax=Lactobacillus salivarius RepID=F5VB91_9LACO
NAD-dependent protein deacetylase of SIR2 family
L3_072_000G1_scaffold_628_15
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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24192..25376
DNA (1185bp) protein (395aa)
Aminotransferase class I and II n=1 Tax=Lactobacillus salivarius SMXD51 RepID=H7FYN8_9LACO
Aminotransferase class I and II {ECO:0000313|EMBL:EIA32638.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
class I and II aminotransferase
L3_072_000G1_scaffold_628_16
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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25531..26220
DNA (690bp) protein (230aa)
Response regulator receiver domain protein n=6 Tax=Lactobacillus salivarius RepID=C2EIA3_9LACO
Two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:EIA32639.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
L3_072_000G1_scaffold_628_17
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26248..27399
DNA (1152bp) protein (384aa)
baeS; two component system histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=362948 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius (strain UCC118).;"
Sensor protein n=2 Tax=Lactobacillus salivarius RepID=D8IJS5_LACSC
L3_072_000G1_scaffold_628_18
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27491..28360
DNA (870bp) protein (290aa)
Aldose 1-epimerase n=1 Tax=Lactobacillus salivarius GJ-24 RepID=F7QSB7_9LACO
Aldose 1-epimerase {ECO:0000313|EMBL:EGM52649.1}; TaxID=1041521 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius GJ-24.;"
Galactose mutarotase
L3_072_000G1_scaffold_628_19
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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28481..29650
DNA (1170bp) protein (390aa)
Transporter, major facilitator family protein n=1 Tax=Lactobacillus salivarius ACS-116-V-Col5a RepID=E1JLH9_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EGL98396.1}; TaxID=1029822 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius NIAS840.;"
hypothetical protein
L3_072_000G1_scaffold_628_20
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29773..31533
DNA (1761bp) protein (587aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Lactobacillus salivarius SMXD51 RepID=H7FYP3_9LACO
L3_072_000G1_scaffold_628_21
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31653..33638
DNA (1986bp) protein (662aa)
ABC transporter, ATP-binding protein n=1 Tax=Lactobacillus salivarius SMXD51 RepID=H7FYP4_9LACO
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EIA32644.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
ABC transporter ATP-binding protein
L3_072_000G1_scaffold_628_22
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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33649..34299
DNA (651bp) protein (217aa)
Transcriptional regulator, TetR family n=3 Tax=Lactobacillus salivarius RepID=D8IJT2_LACSC
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEJ73754.1}; TaxID=1423799 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius DSM 20555 = ATCC 11741.;"
L3_072_000G1_scaffold_628_23
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34321..36054
DNA (1734bp) protein (578aa)
Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein n=1 Tax=Lactobacillus salivarius GJ-24 RepID=F7QRW2_9LACO
Multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein {ECO:0000313|EMBL:EGM52644.1}; TaxID=1041521 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius GJ-24.;"
multidrug ABC transporter permease/ATP-binding protein
L3_072_000G1_scaffold_628_24
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36054..37877
DNA (1824bp) protein (608aa)
Putative xenobiotic-transporting ATPase n=1 Tax=Lactobacillus salivarius GJ-24 RepID=F7QSB4_9LACO
Putative xenobiotic-transporting ATPase {ECO:0000313|EMBL:EGM52643.1}; TaxID=1041521 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius GJ-24.;"
Multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein
L3_072_000G1_scaffold_628_25
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(37933..38073)
DNA (141bp) protein (47aa)
Uncharacterized protein n=6 Tax=Lactobacillus salivarius RepID=C2EI94_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EIA32648.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
hypothetical protein
L3_072_000G1_scaffold_628_26
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

38191..38625
DNA (435bp) protein (145aa)
Acetyltransferase n=2 Tax=Lactobacillus salivarius RepID=H7FYP9_9LACO
Acetyltransferase {ECO:0000313|EMBL:EIA32649.1}; TaxID=1108963 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius SMXD51.;"
acetyltransferase
L3_072_000G1_scaffold_628_27
Lactobacillus salivarius, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

38875..39150
DNA (276bp) protein (92aa)
COG2110, Macro domain, possibly ADP-ribose binding module n=1 Tax=Lactobacillus salivarius cp400 RepID=V6DKN7_9LACO
COG2110, Macro domain, possibly ADP-ribose binding module {ECO:0000313|EMBL:CDK35321.1}; TaxID=1273133 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus salivarius cp400.;"
ATPase associated with chromosome architecture/replication
Displaying 27 items

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