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L3_072_000G1_scaffold_655

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_655_1
unknown

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comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

L3_072_000G1_scaffold_655_2
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(106..1572)
DNA (1467bp) protein (489aa)
Sucrose-6-phosphate hydrolase n=1 Tax=Roseburia sp. CAG:100 RepID=R7R0T3_9FIRM
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:CDF44597.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
sucrose-6-phosphate hydrolase
L3_072_000G1_scaffold_655_3
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(1593..3263)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RML2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44291.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_072_000G1_scaffold_655_4
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3275..4171)
DNA (897bp) protein (299aa)
ABC transporter, permease protein n=3 Tax=Lachnospiraceae RepID=C9L561_BLAHA
ABC transporter, permease protein {ECO:0000313|EMBL:EEX22895.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_072_000G1_scaffold_655_5
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(4183..5124)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RG36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44289.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_072_000G1_scaffold_655_6
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5449..6480
DNA (1032bp) protein (344aa)
Putative ribose operon repressor n=1 Tax=Clostridium sp. CAG:411 RepID=R7HRY2_9CLOT
Putative ribose operon repressor {ECO:0000313|EMBL:CDE42439.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
transcriptional regulator, LacI family
L3_072_000G1_scaffold_655_7
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7252..8106)
DNA (855bp) protein (285aa)
AraC family transcriptional regulator n=1 Tax=Clostridium arbusti RepID=UPI000288439E
AraC family transcriptional regulator {ECO:0000313|EMBL:KGP83131.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
AraC family transcriptional regulator
L3_072_000G1_scaffold_655_8
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8281..9291
DNA (1011bp) protein (337aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KPG0_CLOPH
L3_072_000G1_scaffold_655_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10018..10596)
DNA (579bp) protein (193aa)
Cyclase family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYS4_9CLOT
cyclase family protein
Cyclase family protein {ECO:0000313|EMBL:ABR32465.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_072_000G1_scaffold_655_10
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10764..11252
DNA (489bp) protein (163aa)
Regulatory protein MarR n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYS3_9CLOT
Regulatory protein MarR {ECO:0000313|EMBL:EHI96839.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
MarR family transcriptional regulator
L3_072_000G1_scaffold_655_11
unknown

Not on your lists

11616..11804
DNA (189bp) protein (63aa)

This feature has no annotations

L3_072_000G1_scaffold_655_12
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11997..13355)
DNA (1359bp) protein (453aa)
RNA methyltransferase, TrmA family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ74_CLOSW
RNA methyltransferase {ECO:0000313|EMBL:KEZ89286.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
TrmA family RNA methyltransferase
L3_072_000G1_scaffold_655_13
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13447..13740)
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=D3AQM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EXG86345.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein
L3_072_000G1_scaffold_655_14
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13886..16162)
DNA (2277bp) protein (759aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
UvrD/REP helicase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ72_CLOSW
UvrD/REP helicase
L3_072_000G1_scaffold_655_15
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16166..17047)
DNA (882bp) protein (294aa)
Patatin n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ71_CLOSW
Patatin {ECO:0000313|EMBL:KEZ89289.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
patatin
L3_072_000G1_scaffold_655_16
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17110..18885)
DNA (1776bp) protein (592aa)
ABC transporter related protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ70_CLOSW
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:EXG86342.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC transporter
L3_072_000G1_scaffold_655_17
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18861..20603)
DNA (1743bp) protein (581aa)
ABC transporter related protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ69_CLOSW
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:EXG86341.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC transporter
L3_072_000G1_scaffold_655_18
unknown

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comp(20784..20891)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_072_000G1_scaffold_655_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20995..21690)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KBF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN40020.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_072_000G1_scaffold_655_20
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21705..22034)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M1I1_9FIRM
Cupin {ECO:0000313|EMBL:KEZ89294.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
cupin domain-containing protein
L3_072_000G1_scaffold_655_21
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22203..25229)
DNA (3027bp) protein (1009aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ65_CLOSW
L3_072_000G1_scaffold_655_22
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25328..27025)
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TJP9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ89302.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein
L3_072_000G1_scaffold_655_23
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27059..28240)
DNA (1182bp) protein (394aa)
Glucuronyl hydrolase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5SZL5_9CLOT
Thioredoxin domain-containing protein {ECO:0000313|EMBL:EXG86325.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
putative glucoronyl hydrolase
L3_072_000G1_scaffold_655_24
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28224..30035)
DNA (1812bp) protein (604aa)
uidA; beta-glucuronidase UidA (EC:3.2.1.31)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W7L6_9CLOT
Protease FtsH subunit HflK {ECO:0000313|EMBL:EXG86324.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
L3_072_000G1_scaffold_655_25
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30046..30882)
DNA (837bp) protein (279aa)
ABC transporter permease protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T108_9CLOT
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEZ89305.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
ABC transporter inner membrane protein
L3_072_000G1_scaffold_655_26
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30901..31968)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=R5TQL3_9CLOT
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EXG86322.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC transporter inner membrane protein
L3_072_000G1_scaffold_655_27
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32064..33410)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XSR5_9CLOT
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:EXG86321.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
family 1 extracellular solute-binding protein
L3_072_000G1_scaffold_655_28
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33736..35622
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W803_9CLOT
Putative signal transduction protein with a C-terminal ATPase domain {ECO:0000313|EMBL:EXG86320.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
integral membrane sensor signal transduction histidine kinase
L3_072_000G1_scaffold_655_29
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35627..37243
DNA (1617bp) protein (539aa)
Putative two-component response regulator n=2 Tax=Clostridium RepID=R5SZK5_9CLOT
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:EXG86319.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
response regulator
L3_072_000G1_scaffold_655_30
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37256..37807
DNA (552bp) protein (184aa)
Heparinase II/III family protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ59_CLOSW
Heparinase II/III-like protein {ECO:0000313|EMBL:EXG86318.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
heparinase II/III family protein
Displaying 30 items

View Taxonomy