ggKbase home page

L3_072_000G1_scaffold_661

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_661_1
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(343..1830)
DNA (1488bp) protein (496aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
Glucose-6-phosphate 1-dehydrogenase n=5 Tax=Lactobacillus rhamnosus RepID=C7THA9_LACRL
zwf; glucose-6-phosphate 1-dehydrogenase
L3_072_000G1_scaffold_661_2
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1860..2504)
DNA (645bp) protein (215aa)
Mn-dependent transcriptional regulator n=12 Tax=Lactobacillus rhamnosus RepID=B5QMM3_LACRH
sirR; FeoA family iron-dependent transcriptional regulator
Iron-dependent transcriptional regulator, FeoA family {ECO:0000313|EMBL:CAR86654.1}; Transcriptional regulator {ECO:0000313|EMBL:BAI41263.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_661_3
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2665..5271)
DNA (2607bp) protein (869aa)
Aldehyde-alcohol dehydrogenase n=10 Tax=Lactobacillus rhamnosus RepID=C7THA6_LACRL
3-dehydroquinate synthase
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_4
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5515..6000)
DNA (486bp) protein (162aa)
Preprotein translocase subunit YajC n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C8USA7_LACRG
preprotein translocase subunit YajC
Preprotein translocase subunit YajC {ECO:0000313|EMBL:BAI41261.1}; TaxID=568703 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus (strain ATCC 53103 / GG).;"
L3_072_000G1_scaffold_661_5
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6013..7155)
DNA (1143bp) protein (381aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; Queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Queuine tRNA-ribosyltransferase n=5 Tax=Lactobacillus rhamnosus RepID=C7THA4_LACRL
tgt; Queuine tRNA-ribosyltransferase
L3_072_000G1_scaffold_661_6
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7646..8731)
DNA (1086bp) protein (362aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=6 Tax=Lactobacillus rhamnosus RepID=C8USA5_LACRG
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
L3_072_000G1_scaffold_661_7
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8741..9787)
DNA (1047bp) protein (349aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
Holliday junction ATP-dependent DNA helicase RuvB n=10 Tax=Lactobacillus rhamnosus RepID=B5QML8_LACRH
ruvB; Holliday junction DNA helicase RuvB
L3_072_000G1_scaffold_661_8
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9863..10459)
DNA (597bp) protein (199aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Holliday junction ATP-dependent DNA helicase RuvA n=11 Tax=Lactobacillus rhamnosus RepID=B5QML7_LACRH
ruvA; Holliday junction DNA helicase RuvA
L3_072_000G1_scaffold_661_9
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10551..11147
DNA (597bp) protein (199aa)
Snare associated golgi protein n=6 Tax=Lactobacillus rhamnosus RepID=C7THA0_LACRL
yjbF; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73425.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_10
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11233..11706)
DNA (474bp) protein (158aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
S-ribosylhomocysteine lyase n=14 Tax=Lactobacillus rhamnosus RepID=B5QML5_LACRH
luxS; S-ribosylhomocysteinase
L3_072_000G1_scaffold_661_11
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11841..12974)
DNA (1134bp) protein (378aa)
Methionine synthase, vitamin-B12 independent {ECO:0000313|EMBL:EEN78824.1}; EC=2.1.1.14 {ECO:0000313|EMBL:EEN78824.1};; TaxID=525361 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LMS2-1.;"
Methionine synthase, vitamin-B12 independent domain protein n=5 Tax=Lactobacillus rhamnosus RepID=S5A2U9_LACRH
cobalamin-independent synthase, Catalytic domain protein
L3_072_000G1_scaffold_661_12
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13861..14322
DNA (462bp) protein (154aa)
Conserved protein n=9 Tax=Lactobacillus rhamnosus RepID=C7TAK0_LACRG
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS54171.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_661_13
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14333..14980
DNA (648bp) protein (216aa)
Conserved membrane protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TH96_LACRL
yviA; membrane protein
Membrane protein {ECO:0000313|EMBL:KIC97445.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_661_14
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14990..15835)
DNA (846bp) protein (282aa)
Alpha/beta hydrolase superfamily protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TH95_LACRL
alpha/beta hydrolase superfamily protein
Alpha/beta hydrolase {ECO:0000313|EMBL:KIC97444.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_661_15
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15841..16602)
DNA (762bp) protein (254aa)
Conserved protein n=3 Tax=Lactobacillus rhamnosus RepID=C7TAJ7_LACRG
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KIC97443.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_661_16
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16937..17761
DNA (825bp) protein (275aa)
Aldo/keto reductase related enzyme n=6 Tax=Lactobacillus rhamnosus RepID=B5QMK9_LACRH
dkgA; aldo/keto reductase
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KIC97442.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
L3_072_000G1_scaffold_661_17
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17936..18406
DNA (471bp) protein (157aa)
Putative ribonucleotide reductase n=1 Tax=Lactobacillus rhamnosus (strain ATCC 53103 / GG) RepID=C8US94_LACRG
nrdI Flavodoxin like family protein
Ribonucleotide reduction protein NrdI {ECO:0000313|EMBL:EKS54166.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_661_18
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18422..19354)
DNA (933bp) protein (311aa)
Hydrolase of the alpha/beta superfamily n=2 Tax=Lactobacillus rhamnosus RepID=S5A3I1_LACRH
hydrolase of the alpha/beta superfamily
Hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:AGP73415.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_19
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19476..19934
DNA (459bp) protein (153aa)
Transcriptional regulator n=8 Tax=Lactobacillus rhamnosus RepID=B5QMK6_LACRH
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EKS54164.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_661_20
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20048..20704)
DNA (657bp) protein (219aa)
Hydrolase, haloacid dehalogenase-like family n=3 Tax=Lactobacillus rhamnosus RepID=C7TH89_LACRL
gph; haloacid dehalogenase-like family hydrolase
Phosphoglycolate phosphatase {ECO:0000313|EMBL:AGP73413.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_21
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20961..22115)
DNA (1155bp) protein (385aa)
Na /H antiporter n=3 Tax=Lactobacillus rhamnosus RepID=C7TH87_LACRL
napA; Na/H antiporter
Na(+)/H(+) antiporter {ECO:0000313|EMBL:AGP73412.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_22
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22140..23060)
DNA (921bp) protein (307aa)
Acetyltransferase n=6 Tax=Lactobacillus rhamnosus RepID=C7TH86_LACRL
Acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AGP73411.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_23
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23197..23544)
DNA (348bp) protein (116aa)
Conserved protein n=11 Tax=Lactobacillus rhamnosus RepID=C7TAI9_LACRG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKS54160.1}; TaxID=1203258 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LRHMDP2.;"
L3_072_000G1_scaffold_661_24
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23597..24520)
DNA (924bp) protein (308aa)
Proline iminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; Short=PIP {ECO:0000256|PIRNR:PIRNR005539};; EC=3.4.11.5 {ECO:0000256|PIRNR:PIRNR005539};; Prolyl aminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Proline iminopeptidase n=3 Tax=Lactobacillus rhamnosus RepID=C7TH84_LACRL
pepR; prolyl aminopeptidase
L3_072_000G1_scaffold_661_25
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24687..27035
DNA (2349bp) protein (783aa)
Cation-transporting ATPase n=2 Tax=Lactobacillus rhamnosus RepID=C7TH83_LACRL
ctpE; cation-transporting ATPase
Cation-transporting ATPase {ECO:0000313|EMBL:AGP73408.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_26
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27116..27445
DNA (330bp) protein (110aa)
Conserved protein n=2 Tax=Lactobacillus rhamnosus RepID=C7TH82_LACRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP73407.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_27
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27592..28038)
DNA (447bp) protein (149aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Nucleoside diphosphate kinase n=9 Tax=Lactobacillus rhamnosus RepID=C7TAI5_LACRG
ndk; nucleoside diphosphate kinase
L3_072_000G1_scaffold_661_28
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28376..30190
DNA (1815bp) protein (605aa)
Oligoendopeptidase F n=2 Tax=Lactobacillus rhamnosus RepID=C7TH80_LACRL
pepF; oligoendopeptidase F
Oligoendopeptidase F {ECO:0000313|EMBL:AGP73405.1}; TaxID=1318634 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus LOCK908.;"
L3_072_000G1_scaffold_661_29
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30276..31868)
DNA (1593bp) protein (531aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Lactobacillus rhamnosus RepID=UPI0002F72E7E
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIC97432.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
multidrug ABC transporter ATPase and permease
L3_072_000G1_scaffold_661_30
Lactobacillus rhamnosus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31983..32957
DNA (975bp) protein (325aa)
Transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein n=3 Tax=Lactobacillus rhamnosus RepID=G7V465_LACRH
transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein
Transcriptional regulator {ECO:0000313|EMBL:KIC97431.1}; TaxID=47715 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus rhamnosus.;"
Displaying items 1-30 of 35 in total

View Taxonomy