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L3_072_000G1_scaffold_668

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_668_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..612
DNA (612bp) protein (204aa)
carB2; Carbamoyl-phosphate synthase large chain 2 (EC:6.3.5.5)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ATP-grasp domain protein n=1 Tax=Clostridium difficile P15 RepID=T4KR78_CLODI
L3_072_000G1_scaffold_668_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1006..1128
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PB25_CLODI
Fragment of putative transposase (N-terminalregion)
Uncharacterized protein {ECO:0000313|EMBL:CCL31827.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_668_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1125..1811
DNA (687bp) protein (229aa)
Two-component response regulator n=178 Tax=Clostridium difficile RepID=C9XSJ2_CLODC
two-component response regulator
Two-component response regulator, CheY family {ECO:0000313|EMBL:CCL31826.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_668_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1768..2787
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
two-component sensor histidine kinase (EC:2.7.13.3)
Two-component sensor histidine kinase n=14 Tax=Clostridium difficile RepID=U4BUW1_CLODI
L3_072_000G1_scaffold_668_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2870..3556
DNA (687bp) protein (229aa)
ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CCL31824.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL31824.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ABC transporter, ATP-binding protein n=194 Tax=Clostridium difficile RepID=C9XSJ0_CLODC
ABC transporter ATP-binding protein
L3_072_000G1_scaffold_668_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3556..6102
DNA (2547bp) protein (849aa)
ABC-type transport system, permease n=25 Tax=Clostridium difficile RepID=Q181I5_CLOD6
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ70491.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ABC transporter permease
L3_072_000G1_scaffold_668_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6258..7115)
DNA (858bp) protein (286aa)
Transcriptional regulator, MerR family n=169 Tax=Clostridium difficile RepID=Q181I6_CLOD6
Transcriptional regulator, MerR family
MerR regulatory family protein {ECO:0000313|EMBL:EQG73247.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_668_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7136..7801)
DNA (666bp) protein (222aa)
Pseudouridine synthase, RluA family n=188 Tax=Clostridium difficile RepID=G6BRC5_CLODI
pseudouridylate synthase
RNA pseudouridylate synthase family protein {ECO:0000313|EMBL:EQI74912.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_668_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7801..8673)
DNA (873bp) protein (291aa)
Uncharacterized protein n=199 Tax=Clostridium difficile RepID=C9XSI6_CLODC
putative SAM-dependent methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:CCL31820.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_668_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8841..9584
DNA (744bp) protein (248aa)
Uncharacterized protein n=92 Tax=Clostridium difficile RepID=Q181I4_CLOD6
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33753.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_072_000G1_scaffold_668_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9803..10030)
DNA (228bp) protein (76aa)
Uncharacterized protein n=187 Tax=Clostridium difficile RepID=C9XSI4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL00020.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_000G1_scaffold_668_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10233..10802
DNA (570bp) protein (190aa)
Resolvase n=194 Tax=Clostridium difficile RepID=Q181H9_CLOD6
resolvase
Resolvase {ECO:0000313|EMBL:CEK00295.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90232.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_668_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11362..12516
DNA (1155bp) protein (385aa)
Methionine gamma-lyase {ECO:0000313|EMBL:CCL24052.1}; EC=4.4.1.11 {ECO:0000313|EMBL:CCL24052.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
mdeA; methionine gamma-lyase (EC:4.4.1.11)
Methionine gamma-lyase n=43 Tax=Clostridium difficile RepID=T2X198_CLODI
L3_072_000G1_scaffold_668_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12567..13820
DNA (1254bp) protein (418aa)
Major Facilitator Superfamily protein n=161 Tax=Clostridium difficile RepID=T3FZW4_CLODC
major facilitator superfamily transporter
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EQE58758.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_668_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13946..15340
DNA (1395bp) protein (465aa)
Solute symporter family protein n=166 Tax=Clostridium difficile RepID=T3G1L2_CLODC
putative sodium:solute symporter
Solute symporter family protein {ECO:0000313|EMBL:EQE58752.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_668_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15355..15585
DNA (231bp) protein (77aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=Q181H7_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24049.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_668_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15602..16132
DNA (531bp) protein (177aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=T2W8P4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE58743.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_072_000G1_scaffold_668_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16308..17018
DNA (711bp) protein (237aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=C9XSH7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24047.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_072_000G1_scaffold_668_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17133..17630
DNA (498bp) protein (166aa)
Uncharacterized protein n=191 Tax=Clostridium difficile RepID=Q181H5_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70478.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_668_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17640..17801
DNA (162bp) protein (54aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=C9XSH5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE58762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_668_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17911..18849
DNA (939bp) protein (313aa)
Membrane dipeptidase family protein n=2 Tax=Clostridium difficile RepID=T4PAY1_CLODI
Membrane dipeptidase family protein {ECO:0000313|EMBL:EQE58751.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
dipeptidase
L3_072_000G1_scaffold_668_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18933..19793
DNA (861bp) protein (287aa)
Sporulation-specific protease n=217 Tax=Clostridium difficile RepID=Q181G9_CLOD6
peptidase
Sporulation-specific protease {ECO:0000313|EMBL:CCK96060.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_072_000G1_scaffold_668_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19899..20207
DNA (309bp) protein (103aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=D5QA10_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH05266.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_072_000G1_scaffold_668_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20301..21851
DNA (1551bp) protein (517aa)
LysM domain protein n=73 Tax=Clostridium difficile RepID=T3G2W0_CLODC
sipL; spore coat protein
Putative phage cell wall hydrolase {ECO:0000313|EMBL:CCL31805.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_668_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21969..22859
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=167 Tax=Clostridium difficile RepID=ISPE_CLOD6
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_072_000G1_scaffold_668_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22807..23523
DNA (717bp) protein (239aa)
FCD domain protein n=3 Tax=Clostridium difficile RepID=G6B3Q4_CLODI
FCD domain protein {ECO:0000313|EMBL:EHJ33735.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
GntR family transcriptional regulator
L3_072_000G1_scaffold_668_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23668..24327
DNA (660bp) protein (220aa)
Stage II sporulation protein n=211 Tax=Clostridium difficile RepID=C9XSG8_CLODC
stage II sporulation protein
Pro-sigma(E) endopeptidase (Stage II sporulation) {ECO:0000313|EMBL:CCL31802.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_668_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24357..24863
DNA (507bp) protein (169aa)
Cell Wall Hydrolase family protein n=1 Tax=Clostridium difficile F253 RepID=T4A9H8_CLODI
spore cortex-lytic enzyme
Putative spore cortex-lytic enzyme {ECO:0000313|EMBL:CDS90200.1}; Putative spore cortex-lytic hydrolase {ECO:0000313|EMBL:CEK00279.1}; Spore cortex-lytic enzyme {ECO:0000313|EMBL:CKG69492.1}; Spore-cortex-lytic protein {ECO:0000313|EMBL:CDS89982.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_668_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25065..25871
DNA (807bp) protein (269aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Glutamate racemase n=201 Tax=Clostridium difficile RepID=C9XSG6_CLODC
glutamate racemase
L3_072_000G1_scaffold_668_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25888..26316
DNA (429bp) protein (143aa)
Uncharacterized protein n=25 Tax=Clostridium difficile RepID=C9XSG5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE07453.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Displaying items 1-30 of 40 in total

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