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L3_072_000G1_scaffold_713

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_713_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..262
DNA (261bp) protein (87aa)
Peptidase M20/M25/M40 family protein n=1 Tax=Clostridium difficile DA00195 RepID=T3SVY6_CLODI
peptidase
Peptidase M20/M25/M40 family protein {ECO:0000313|EMBL:EQE59659.1}; Flags: Fragment;; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_713_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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278..1861
DNA (1584bp) protein (528aa)
D-aminoacylase n=135 Tax=Clostridium difficile RepID=C9XRA2_CLODC
D-aminoacylase
Amidohydrolase family protein {ECO:0000313|EMBL:EQG74465.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_713_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1889..3217
DNA (1329bp) protein (443aa)
Selenium metabolism SsnA family protein n=2 Tax=Clostridium difficile RepID=T4PFV5_CLODI
chlorohydrolase/aminohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:CBE06803.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_713_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3416..4768
DNA (1353bp) protein (451aa)
Xanthine permease n=134 Tax=Clostridium difficile RepID=G6BQE9_CLODI
Putative purine permease {ECO:0000313|EMBL:CCL23588.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
xanthine permease
L3_072_000G1_scaffold_713_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4960..6069
DNA (1110bp) protein (370aa)
Dihydroorotate dehydrogenase, catalytic subunit {ECO:0000313|EMBL:CCL31452.1}; EC=1.3.98.1 {ECO:0000313|EMBL:CCL31452.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Dihydroorotate dehydrogenase, catalytic subunit n=178 Tax=Clostridium difficile RepID=Q181U4_CLOD6
dihydroorotate dehydrogenase, catalytic subunit
L3_072_000G1_scaffold_713_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6352..7743
DNA (1392bp) protein (464aa)
D-hydantoinase n=110 Tax=Clostridium difficile RepID=C9XR98_CLODC
D-hydantoinase
D-hydantoinase {ECO:0000313|EMBL:CBE06798.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_072_000G1_scaffold_713_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7737..10298
DNA (2562bp) protein (854aa)
Putative xanthine dehydrogenase {ECO:0000313|EMBL:CCL23585.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCL23585.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
2Fe-2S iron-sulfur cluster binding domain protein n=2 Tax=Clostridium difficile RepID=T4P9U7_CLODI
xanthine dehydrogenase, molybdenum binding and iron-sulfur binding subunits
L3_072_000G1_scaffold_713_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10450..11796
DNA (1347bp) protein (449aa)
RNA polymerase sigma-54 factor n=207 Tax=Clostridium difficile RepID=C9XR96_CLODC
RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:CCK98456.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_072_000G1_scaffold_713_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12577..13599
DNA (1023bp) protein (341aa)
Central glycolytic genes regulator n=195 Tax=Clostridium difficile RepID=C9XR95_CLODC
central glycolytic genes regulator
Transcriptional regulator, SorC family {ECO:0000313|EMBL:CCL31448.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_713_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13659..14666
DNA (1008bp) protein (336aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Glyceraldehyde-3-phosphate dehydrogenase 2 n=203 Tax=Clostridium difficile RepID=C9XR94_CLODC
gapB; glyceraldehyde-3-phosphate dehydrogenase 2
L3_072_000G1_scaffold_713_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14888..16090
DNA (1203bp) protein (401aa)
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000255|HAMAP-Rule:MF_00145}; EC=2.7.2.3 {ECO:0000255|HAMAP-Rule:MF_00145};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Phosphoglycerate kinase n=193 Tax=Clostridium difficile RepID=PGK_CLOD6
L3_072_000G1_scaffold_713_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16116..16859
DNA (744bp) protein (248aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
tpi; Triosephosphate isomerase (TIM)(Triose-phosphate isomerase) (EC:5.3.1.1)
Triosephosphate isomerase n=140 Tax=Clostridium difficile RepID=G6BQE1_CLODI
L3_072_000G1_scaffold_713_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16871..18400
DNA (1530bp) protein (510aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
gpmI; phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=28 Tax=Clostridium difficile RepID=T2UP07_CLODI
L3_072_000G1_scaffold_713_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18934..20280
DNA (1347bp) protein (449aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
eno; enolase (EC:4.2.1.11)
Enolase n=27 Tax=Clostridium difficile RepID=G6BA46_CLODI
L3_072_000G1_scaffold_713_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20885..21109
DNA (225bp) protein (75aa)
Preprotein translocase, SecG subunit n=215 Tax=Clostridium difficile RepID=C9XR88_CLODC
subunit of preprotein translocase
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EQG74550.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_713_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21493..22431)
DNA (939bp) protein (313aa)
Putative malate transporter n=3 Tax=Clostridium difficile RepID=Q181W0_CLOD6
putative malate transporter
Putative malate transporter {ECO:0000313|EMBL:CAJ70065.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_713_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22419..22814)
DNA (396bp) protein (132aa)
Glyoxalase-like domain protein n=2 Tax=Clostridium difficile RepID=T4PFU0_CLODI
Putative dioxygenase {ECO:0000313|EMBL:EQE59685.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_072_000G1_scaffold_713_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23504..24001)
DNA (498bp) protein (166aa)
Phosphatidylethanolamine-binding family protein n=198 Tax=Clostridium difficile RepID=C9XR85_CLODC
phosphatidylethanolamine-binding regulatory protein
Phosphatidylethanolamine-binding family protein {ECO:0000313|EMBL:EQI76431.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_072_000G1_scaffold_713_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24107..24469)
DNA (363bp) protein (121aa)
HxlR-like helix-turn-helix family protein n=140 Tax=Clostridium difficile RepID=T3G4A2_CLODC
HxlR family transcriptional regulator
Transcriptional regulator, hxlR family {ECO:0000313|EMBL:CAJ70062.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_072_000G1_scaffold_713_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24487..25101)
DNA (615bp) protein (205aa)
Uncharacterized protein n=117 Tax=Clostridium difficile RepID=T3G6N0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31437.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_713_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25697..27832
DNA (2136bp) protein (712aa)
rnr; ribonuclease R (EC:3.1.-.-)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Ribonuclease R n=2 Tax=Clostridium difficile RepID=T4P9T2_CLODI
L3_072_000G1_scaffold_713_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28840..29331
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PFT5_CLODI
conserved hypothetical protein
Domain of uncharacterised function (DUF1877) {ECO:0000313|EMBL:CKG81879.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99812.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_713_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29861..30733
DNA (873bp) protein (291aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=140 Tax=Clostridium difficile RepID=T3G842_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQG74557.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_072_000G1_scaffold_713_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30730..32019
DNA (1290bp) protein (430aa)
ABC-2 transporter family protein n=68 Tax=Clostridium difficile RepID=T3G422_CLODC
multidrug family ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:CKG81926.1}; ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CDS89738.1}; ABC-type transport system, multidrug-familypermease {ECO:0000313|EMBL:CEJ99810.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_072_000G1_scaffold_713_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32048..32593
DNA (546bp) protein (182aa)
ABC-type transport system, multidrug-family permease n=2 Tax=Clostridium difficile RepID=U4D2Q5_CLODI
multidrug family ABC transporter permease
Putative membrane protein {ECO:0000313|EMBL:EQE59767.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_713_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32860..33141)
DNA (282bp) protein (94aa)
Acetyltransferase family protein n=2 Tax=Clostridium difficile RepID=T4P9S6_CLODI
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CDS89734.1}; Putative FemA-like peptidoglycan biosynthesis protein {ECO:0000313|EMBL:CDS89125.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
FemA-like peptidoglycan biosynthesis protein
L3_072_000G1_scaffold_713_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33226..33324)
DNA (99bp) protein (33aa)
Acetyltransferase family protein n=3 Tax=Clostridium difficile RepID=T3NZ74_CLODI
acetyltransferase
Putative FemA-like peptidoglycan biosynthesis protein {ECO:0000313|EMBL:CCL31425.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_072_000G1_scaffold_713_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34347..35174)
DNA (828bp) protein (276aa)
Mitochondria biogenesis AIM24 family protein n=88 Tax=Clostridium difficile RepID=T3G500_CLODC
Transcriptional regulator, TRAP family
Mitochondria biogenesis AIM24 family protein {ECO:0000313|EMBL:EQE59779.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_072_000G1_scaffold_713_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35709..36200
DNA (492bp) protein (164aa)
SsrA-binding protein n=3 Tax=Clostridium difficile RepID=G6BA62_CLODI
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
smpB; SsrA-binding protein
L3_072_000G1_scaffold_713_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37023..37238
DNA (216bp) protein (72aa)
Uncharacterized protein n=112 Tax=Clostridium difficile RepID=T3G979_CLODC
conserved hypothetical protein
Transcriptional regulator {ECO:0000313|EMBL:CKG82072.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89727.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 88 in total

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