ggKbase home page

L3_072_000G1_scaffold_737

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_737_1
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3..434)
DNA (432bp) protein (144aa)
Exopolysaccharide biosynthesis protein n=1 Tax=Lactobacillus fermentum 3872 RepID=U2HDD9_LACFE
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:KJY07486.1}; TaxID=1613 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum.;"
exopolysaccharide biosynthesis protein
L3_072_000G1_scaffold_737_2
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(451..1221)
DNA (771bp) protein (257aa)
Exopolysaccharide biosynthesis protein n=1 Tax=Lactobacillus fermentum MTCC 8711 RepID=T0TM58_LACFE
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:KIL02062.1}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
capsular polysaccharide biosynthesis protein cpsC
L3_072_000G1_scaffold_737_3
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1221..2216)
DNA (996bp) protein (332aa)
Transcriptional regulator n=1 Tax=Lactobacillus fermentum 3872 RepID=U2IBW7_LACFE
Transcriptional regulator {ECO:0000313|EMBL:ERJ50239.1}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
Eps transcriptional regulator
L3_072_000G1_scaffold_737_4
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2566..3708)
DNA (1143bp) protein (381aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964};; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Lactobacillus fermentum RepID=B2GF28_LACF3
inosine-5'-monophosphate dehydrogenase
L3_072_000G1_scaffold_737_5
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3979..4752)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) RepID=B2GF27_LACF3
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAG26416.1}; TaxID=334390 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain NBRC 3956 / LMG 18251).;"
L3_072_000G1_scaffold_737_6
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4786..5883)
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=2 Tax=Lactobacillus fermentum RepID=R4RUG2_LACFE
hypothetical protein
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_737_7
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5899..6099)
DNA (201bp) protein (67aa)
Uncharacterized protein n=3 Tax=Lactobacillus fermentum RepID=C0WW19_LACFE
Uncharacterized protein {ECO:0000313|EMBL:EEX26249.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
hypothetical protein
L3_072_000G1_scaffold_737_8
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6112..6945)
DNA (834bp) protein (278aa)
Chromosome partitioning protein ParB n=1 Tax=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) RepID=B2GF24_LACF3
chromosome partitioning protein ParB
Chromosome partitioning protein ParB {ECO:0000313|EMBL:CDI69746.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
L3_072_000G1_scaffold_737_9
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6959..7894)
DNA (936bp) protein (312aa)
ParB-like protein n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DSI6_LACFE
ParB-like protein {ECO:0000313|EMBL:EEX26247.1}; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
Stage 0 DNA-binding protein
L3_072_000G1_scaffold_737_10
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7913..8674)
DNA (762bp) protein (254aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Lactobacillus fermentum RepID=R4RU99_LACFE
gidB; 16S rRNA methyltransferase GidB
L3_072_000G1_scaffold_737_11
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8839..9759)
DNA (921bp) protein (307aa)
ribosylpyrimidine nucleosidase (EC:3.2.2.8)
Possible ribosylpyrimidine nucleosidase n=7 Tax=Lactobacillus fermentum RepID=D8IGF0_LACFC
Ribonucleoside hydrolase {ECO:0000313|EMBL:EQC58595.1}; TaxID=1366052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum MTCC 8711.;"
L3_072_000G1_scaffold_737_12
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9994..11193)
DNA (1200bp) protein (400aa)
Nucleoside transporter n=1 Tax=Lactobacillus fermentum F-6 RepID=R4RQR7_LACFE
Nucleoside transporter
Nucleoside transporter {ECO:0000313|EMBL:AGL87997.1}; TaxID=767453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum F-6.;"
L3_072_000G1_scaffold_737_13
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12074..13447)
DNA (1374bp) protein (458aa)
Amino acid permease n=1 Tax=Lactobacillus fermentum ATCC 14931 RepID=C0WW13_LACFE
Amino acid permease {ECO:0000313|EMBL:EEI22738.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
APC family amino acid-polyamine-organocation transporter
L3_072_000G1_scaffold_737_14
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13823..14566)
DNA (744bp) protein (248aa)
Glutamine ABC transporter, ATP-binding protein GlnQ {ECO:0000313|EMBL:EEX26242.1}; EC=3.6.3.- {ECO:0000313|EMBL:EEX26242.1};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
Glutamine ABC transporter, ATP-binding protein GlnQ n=2 Tax=Lactobacillus fermentum RepID=D0DSI1_LACFE
glutamine ABC transporter ATP-binding protein
L3_072_000G1_scaffold_737_15
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14570..16024)
DNA (1455bp) protein (485aa)
Glutamate ABC superfamily ATP binding cassette transporter, membrane protein n=1 Tax=Lactobacillus fermentum (strain CECT 5716) RepID=D8IGE6_LACFC
glutamate ABC superfamily ATP binding cassette transporter, membrane protein
Glutamate ABC superfamily ATP binding cassette transporter, membrane protein {ECO:0000313|EMBL:ADJ40727.1}; TaxID=712938 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain CECT 5716).;"
L3_072_000G1_scaffold_737_16
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16492..17745
DNA (1254bp) protein (418aa)
Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=712938 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum (strain CECT 5716).;"
Tyrosine--tRNA ligase n=1 Tax=Lactobacillus fermentum (strain CECT 5716) RepID=D8IGE5_LACFC
L3_072_000G1_scaffold_737_17
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18003..19016
DNA (1014bp) protein (338aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Tryptophan--tRNA ligase n=2 Tax=Lactobacillus fermentum RepID=C0WW09_LACFE
Tryptophanyl-tRNA synthetase II
L3_072_000G1_scaffold_737_18
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19519..20817)
DNA (1299bp) protein (433aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4ZI81_LACFE
L3_072_000G1_scaffold_737_19
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21105..24209)
DNA (3105bp) protein (1035aa)
Exonuclease SbcC n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4X345_LACFE
Exonuclease SbcC {ECO:0000313|EMBL:ESS01944.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
Exonuclease SbcC
L3_072_000G1_scaffold_737_20
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24206..25339)
DNA (1134bp) protein (378aa)
Exonuclease SbcD n=4 Tax=Lactobacillus fermentum RepID=B2GF11_LACF3
exonuclease SbcD
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EEI22762.1}; TaxID=525325 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum ATCC 14931.;"
L3_072_000G1_scaffold_737_21
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25566..25697
DNA (132bp) protein (44aa)
Cytochrome C554 n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4XTL8_LACFE
Cytochrome C554 {ECO:0000313|EMBL:ESS01942.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
hypothetical protein
L3_072_000G1_scaffold_737_22
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25712..27241
DNA (1530bp) protein (510aa)
D-alanine--poly(phosphoribitol) ligase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00593, ECO:0000256|SAAS:SAAS00015849}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00593, ECO:0000256|SAAS:SAAS00015392};; D-alanine-D-alanyl carrier protein ligase {ECO:0000256|HAMAP-Rule:MF_00593}; D-alanine-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00593}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
D-alanine--poly(phosphoribitol) ligase subunit 1 n=4 Tax=Lactobacillus fermentum RepID=B2GF10_LACF3
D-alanine-activating enzyme
L3_072_000G1_scaffold_737_23
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27241..28467
DNA (1227bp) protein (409aa)
Protein DltB n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DSH2_LACFE
D-alanyl transfer protein {ECO:0000313|EMBL:CDI68342.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
D-alanyl transfer protein
L3_072_000G1_scaffold_737_24
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28497..28733
DNA (237bp) protein (79aa)
D-alanine--poly(phosphoribitol) ligase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00565}; EC=6.1.1.13 {ECO:0000256|HAMAP-Rule:MF_00565, ECO:0000256|SAAS:SAAS00096727};; D-alanyl carrier protein {ECO:0000256|HAMAP-Rule:MF_00565}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
D-alanine--poly(phosphoribitol) ligase subunit 2 n=6 Tax=Lactobacillus fermentum RepID=B2GF08_LACF3
D-alanine-poly(Phosphoribitol) ligase, subunit 2
L3_072_000G1_scaffold_737_25
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28747..30039
DNA (1293bp) protein (431aa)
D-alanyl transfer protein n=1 Tax=Lactobacillus fermentum NB-22 RepID=V4XJ06_LACFE
D-alanyl transfer protein {ECO:0000313|EMBL:ESS01938.1}; TaxID=1408443 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum NB-22.;"
D-alanyl transfer protein
L3_072_000G1_scaffold_737_26
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30157..31101)
DNA (945bp) protein (315aa)
Protein IolS {ECO:0000313|EMBL:EEX26230.1}; EC=1.1.1.- {ECO:0000313|EMBL:EEX26230.1};; TaxID=575599 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 28-3-CHN.;"
Protein IolS n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DSG9_LACFE
oxidoreductase ion channel protein IolS
L3_072_000G1_scaffold_737_27
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31189..32565)
DNA (1377bp) protein (459aa)
Branched-chain amino acid transporter II carrier protein n=1 Tax=Lactobacillus fermentum 3872 RepID=U2H5T3_LACFE
Branched-chain amino acid transport system II car rier protein {ECO:0000313|EMBL:CDI68338.1}; TaxID=1407052 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum L930BB.;"
branched-chain amino acid ABC transporter
L3_072_000G1_scaffold_737_28
Lactobacillus fermentum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33018..34442
DNA (1425bp) protein (475aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Lactobacillus fermentum RepID=R4RFD7_LACFE
23S rRNA (Uracil-5-)-methyltransferase RumA
RNA methyltransferase {ECO:0000313|EMBL:KIL02132.1}; TaxID=1381124 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus fermentum 3872.;"
Displaying 28 items

View Taxonomy