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L3_072_000G1_scaffold_738

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_738_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..776
DNA (774bp) protein (258aa)
UPI0003D59C96 related cluster n=1 Tax=unknown RepID=UPI0003D59C96
ATPase {ECO:0000313|EMBL:ETJ11094.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
Hypothetical protein
L3_072_000G1_scaffold_738_2
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(940..1416)
DNA (477bp) protein (159aa)
UPI0003D63120 related cluster n=1 Tax=unknown RepID=UPI0003D63120
Uncharacterized protein {ECO:0000313|EMBL:KGF11748.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
L3_072_000G1_scaffold_738_3
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1471..2862)
DNA (1392bp) protein (464aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IJP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11757.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
RNA methyltransferase
L3_072_000G1_scaffold_738_4
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2878..3792)
DNA (915bp) protein (305aa)
6-phosphofructokinase {ECO:0000256|SAAS:SAAS00197180}; EC=2.7.1.11 {ECO:0000256|SAAS:SAAS00197180};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
6-phosphofructokinase n=1 Tax=Megasphaera sp. UPII 135-E RepID=F9MPJ9_9FIRM
6-phosphofructokinase
L3_072_000G1_scaffold_738_5
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(3749..4444)
DNA (696bp) protein (232aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D6177C related cluster n=1 Tax=unknown RepID=UPI0003D6177C
shikimate kinase
L3_072_000G1_scaffold_738_6
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4636..6084)
DNA (1449bp) protein (483aa)
UPI0003D61179 related cluster n=1 Tax=unknown RepID=UPI0003D61179
Putrescine-ornithine antiporter {ECO:0000313|EMBL:ETI86612.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
potE; putrescine transporter
L3_072_000G1_scaffold_738_7
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(6182..8374)
DNA (2193bp) protein (731aa)
ornithine decarboxylase (EC:4.1.1.17)
UPI0003D5BE90 related cluster n=1 Tax=unknown RepID=UPI0003D5BE90
Orn/Lys/Arg decarboxylase, major protein {ECO:0000313|EMBL:ETI86613.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
L3_072_000G1_scaffold_738_8
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9032..10591)
DNA (1560bp) protein (520aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
UPI0003D6645B related cluster n=1 Tax=unknown RepID=UPI0003D6645B
lysyl-tRNA synthetase
L3_072_000G1_scaffold_738_9
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10838..11782)
DNA (945bp) protein (315aa)
UPI0003D674DB related cluster n=1 Tax=unknown RepID=UPI0003D674DB
Uncharacterized protein {ECO:0000313|EMBL:KGF11761.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
putative LysR family transcriptional regulator
L3_072_000G1_scaffold_738_10
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11881..13218)
DNA (1338bp) protein (446aa)
UPI0003D64C53 related cluster n=1 Tax=unknown RepID=UPI0003D64C53
Putrescine transporter {ECO:0000313|EMBL:KGF11762.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
potE; putrescine transporter
L3_072_000G1_scaffold_738_11
Yersinia enterocolitica, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13259..15493)
DNA (2235bp) protein (745aa)
speF2; ornithine decarboxylase, inducible (EC:4.1.1.17)
Ornithine decarboxylase, inducible {ECO:0000313|EMBL:CCQ39101.1}; EC=4.1.1.17 {ECO:0000313|EMBL:CCQ39101.1};; TaxID=1262462 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia enterocolitica (type O:5) str. YE53/03.;"
ornithine decarboxylase n=1 Tax=Zymophilus raffinosivorans RepID=UPI000374744A
L3_072_000G1_scaffold_738_12
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15807..16292)
DNA (486bp) protein (162aa)
UPI0003D689BC related cluster n=1 Tax=unknown RepID=UPI0003D689BC
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
GreA/GreB family elongation factor
L3_072_000G1_scaffold_738_13
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16396..17385)
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
tRNA-dihydrouridine synthase n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D287_9FIRM
tRNA-dihydrouridine synthase
L3_072_000G1_scaffold_738_14
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17369..18133)
DNA (765bp) protein (255aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D68711 related cluster n=1 Tax=unknown RepID=UPI0003D68711
type III pantothenate kinase
L3_072_000G1_scaffold_738_15
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18145..19128)
DNA (984bp) protein (328aa)
Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Dialister micraerophilus RepID=F2BVU0_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
biotin--acetyl-CoA-carboxylase ligase
L3_072_000G1_scaffold_738_16
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19266..21263)
DNA (1998bp) protein (666aa)
UPI0003D5F083 related cluster n=1 Tax=unknown RepID=UPI0003D5F083
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:ETI86205.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
ATP-dependent zinc metalloprotease FtsH
L3_072_000G1_scaffold_738_17
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21340..21879)
DNA (540bp) protein (180aa)
UPI0003D59B8A related cluster n=1 Tax=unknown RepID=UPI0003D59B8A
Hypoxanthine phosphoribosyl transferase {ECO:0000313|EMBL:ETI85997.1}; Flags: Fragment;; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
hypoxanthine phosphoribosyltransferase
L3_072_000G1_scaffold_738_18
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21845..23236)
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
UPI0003D682B8 related cluster n=1 Tax=unknown RepID=UPI0003D682B8
tRNA(Ile)-lysidine synthetase
L3_072_000G1_scaffold_738_19
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23233..24126)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Dialister succinatiphilus YIT 11850 RepID=H1CZV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF11769.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
Ppx/GppA phosphatase
L3_072_000G1_scaffold_738_20
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24179..24646)
DNA (468bp) protein (156aa)
UPI0003D64DBB related cluster n=1 Tax=unknown RepID=UPI0003D64DBB
Uncharacterized protein {ECO:0000313|EMBL:KGF11770.1}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
general stress protein 13
L3_072_000G1_scaffold_738_21
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(24723..25103)
DNA (381bp) protein (127aa)
UPI0003D5A175 related cluster n=1 Tax=unknown RepID=UPI0003D5A175
Uncharacterized protein {ECO:0000313|EMBL:ETI86461.1}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
septum formation initiator
L3_072_000G1_scaffold_738_22
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25172..25543)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=2 Tax=Megamonas RepID=D4KEE6_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
LSU ribosomal protein L12P
L3_072_000G1_scaffold_738_23
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(25573..26103)
DNA (531bp) protein (177aa)
UPI0003D67DB4 related cluster n=1 Tax=unknown RepID=UPI0003D67DB4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L10
L3_072_000G1_scaffold_738_24
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26284..26991)
DNA (708bp) protein (236aa)
UPI0003D60A86 related cluster n=1 Tax=unknown RepID=UPI0003D60A86
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1230730 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
50S ribosomal protein L1
L3_072_000G1_scaffold_738_25
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(27023..27448)
DNA (426bp) protein (142aa)
UPI0003D5A812 related cluster n=1 Tax=unknown RepID=UPI0003D5A812
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L11
L3_072_000G1_scaffold_738_26
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27520..28071)
DNA (552bp) protein (184aa)
UPI0003D60133 related cluster n=1 Tax=unknown RepID=UPI0003D60133
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
NusG antitermination factor
L3_072_000G1_scaffold_738_27
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(28081..28308)
DNA (228bp) protein (76aa)
UPI0003D5D105 related cluster n=1 Tax=unknown RepID=UPI0003D5D105
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
preprotein translocase subunit SecE
L3_072_000G1_scaffold_738_28
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(28345..28494)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGN8_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L33
L3_072_000G1_scaffold_738_29
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(28735..29085)
DNA (351bp) protein (117aa)
UPI0003D5AE39 related cluster n=1 Tax=unknown RepID=UPI0003D5AE39
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
50S ribosomal protein L20
L3_072_000G1_scaffold_738_30
Negativicoccus succinicivorans, Negativicoccus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(29104..29301)
DNA (198bp) protein (66aa)
UPI0003D607F7 related cluster n=1 Tax=unknown RepID=UPI0003D607F7
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1403945 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Negativicoccus.;" source="Negativicoccus succinicivorans DORA_17_25.;"
LSU ribosomal protein L35P
Displaying items 1-30 of 37 in total

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