ggKbase home page

L3_072_000G1_scaffold_361

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_361_1
Pantoea sp. YR343, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137..1120)
DNA (984bp) protein (328aa)
ABC-type uncharacterized transport system, permease component n=1 Tax=Pantoea sp. YR343 RepID=J2VWX2_9ENTR
ABC-type uncharacterized transport system, permease component {ECO:0000313|EMBL:EJN04715.1}; Flags: Precursor;; TaxID=1144341 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. YR343.;"
yohM; putative nickel/cobalt efflux system HI1248 YohM
L3_072_000G1_scaffold_361_2
Pantoea stewartii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1111..1755)
DNA (645bp) protein (215aa)
Putative uncharacterized protein n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=H3RGL2_ERWST
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KHN62955.1}; TaxID=66269 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea stewartii.;"
L3_072_000G1_scaffold_361_3
Pantoea sp. 3.5.1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1895..3163
DNA (1269bp) protein (423aa)
Stationary phase inducible protein CsiE n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2LSD3_9ENTR
Stationary phase inducible protein CsiE {ECO:0000313|EMBL:KKD32473.1}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
stationary phase inducible protein CsiE
L3_072_000G1_scaffold_361_4
Pantoea sp. YR343, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3160..4299)
DNA (1140bp) protein (380aa)
Arabinose efflux permease family protein n=1 Tax=Pantoea sp. YR343 RepID=J3HT30_9ENTR
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJN04718.1}; TaxID=1144341 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. YR343.;"
hcaT; 3-phenylpropionic acid transporter
L3_072_000G1_scaffold_361_5
Enterobacter cancerogenus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4416..5669)
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=69218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cancerogenus.;"
Serine hydroxymethyltransferase n=1 Tax=Pantoea ananatis PA13 RepID=G7UIC5_PANAN
serine hydroxymethyltransferase 1 GlyA1
L3_072_000G1_scaffold_361_6
Pantoea sp. 3.5.1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6001..7185
DNA (1185bp) protein (395aa)
hmpA; flavohemoprotein (EC:1.14.12.17)
Flavohemoprotein n=1 Tax=Pantoea vagans (strain C9-1) RepID=E1SAS4_PANVC
Flavohemoprotein {ECO:0000256|HAMAP-Rule:MF_01252}; Flavohemoglobin {ECO:0000256|HAMAP-Rule:MF_01252}; Hemoglobin-like protein {ECO:0000256|HAMAP-Rule:MF_01252}; Nitric oxide dioxygenase {ECO:0000256|HAMAP-Rule:MF_01252}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
L3_072_000G1_scaffold_361_7
Pantoea dispersa, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7379..7717)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=5 Tax=Pantoea RepID=E6WF31_PANSA
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ERH66659.1}; TaxID=1358411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea dispersa EGD-AAK13.;"
L3_072_000G1_scaffold_361_8
Pantoea stewartii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7866..9200)
DNA (1335bp) protein (445aa)
Putative sensor histidine kinase n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=H3RGL9_ERWST
Putative sensor histidine kinase {ECO:0000313|EMBL:EHT99576.1}; TaxID=660596 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea stewartii subsp. stewartii DC283.;"
putative two component, sigma54 specific, transcriptional regulator, Fis family
L3_072_000G1_scaffold_361_9
Pantoea vagans, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9200..9868)
DNA (669bp) protein (223aa)
Uncharacterized protein yfhG n=1 Tax=Pantoea vagans (strain C9-1) RepID=E1SAS8_PANVC
yfhG; hypothetical protein
Uncharacterized protein yfhG {ECO:0000313|EMBL:ADO10476.1}; TaxID=712898 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea vagans (strain C9-1) (Pantoea agglomerans (strain C9-1)).;"
L3_072_000G1_scaffold_361_10
Pantoea ananatis, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9872..11299)
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea ananas (Erwinia uredovora).;"
sensory histidine kinase n=1 Tax=Enterobacter agglomerans RepID=UPI00026D204F
yfhK; integral membrane sensor signal transduction histidine kinase
L3_072_000G1_scaffold_361_11
unknown

Not on your lists

comp(11649..11828)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_072_000G1_scaffold_361_12
Pantoea dispersa, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11864..15754)
DNA (3891bp) protein (1297aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1358411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea dispersa EGD-AAK13.;"
phosphoribosylformylglycinamidine synthase n=1 Tax=Pantoea sp. A4 RepID=UPI00038193B5
L3_072_000G1_scaffold_361_13
Pantoea rodasii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16020..17477
DNA (1458bp) protein (486aa)
Membrane-bound lytic murein transglycosylase F {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00176609}; EC=4.2.2.n1 {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00166192};; Murein lyase F {ECO:0000256|HAMAP-Rule:MF_02016}; Flags: Precursor;; TaxID=1076549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea rodasii.;"
Membrane-bound lytic murein transglycosylase F n=2 Tax=Enterobacteriaceae RepID=U1U8B6_9ENTR
putative transglycosylase YfhD
L3_072_000G1_scaffold_361_14
Pantoea sp. AS-PWVM4, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17509..18006)
DNA (498bp) protein (166aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1332069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. AS-PWVM4.;"
tRNA-specific adenosine-34 deaminase n=1 Tax=Pantoea sp. AS-PWVM4 RepID=U2MBD7_9ENTR
CMP/dCMP deaminase zinc-binding protein
L3_072_000G1_scaffold_361_15
Pantoea anthophila, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18078..18716)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Pantoea sp. Sc1 RepID=H8DM36_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KKB03884.1}; TaxID=470931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea anthophila.;"
yfhB; hypothetical protein
L3_072_000G1_scaffold_361_16
Pantoea anthophila, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18887..19726
DNA (840bp) protein (280aa)
yfhH; Bifunctional protein glk (EC:2.7.1.2)
Putative DNA-binding transcriptional regulator n=1 Tax=Pantoea sp. Sc1 RepID=H8DM35_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KKB03885.1}; TaxID=470931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea anthophila.;"
L3_072_000G1_scaffold_361_17
Pantoea sp. GM01, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19777..20025
DNA (249bp) protein (83aa)
ferredoxin n=1 Tax=gamma proteobacterium WG36 RepID=UPI0003783B84
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:EJL92345.1}; TaxID=1144320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. GM01.;"
ferredoxin
L3_072_000G1_scaffold_361_18
Pantoea anthophila, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20022..20402)
DNA (381bp) protein (127aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=470931 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea anthophila.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Pantoea sp. Sc1 RepID=H8DM33_9ENTR
holo-acyl-carrier-protein synthase
L3_072_000G1_scaffold_361_19
Pantoea ananatis, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20402..21133)
DNA (732bp) protein (244aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea ananas (Erwinia uredovora).;"
pyridoxine 5''''-phosphate synthase n=1 Tax=Pantoea RepID=UPI0002553DA9
pyridoxine 5'-phosphate synthase
L3_072_000G1_scaffold_361_20
Pantoea dispersa, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21200..21928)
DNA (729bp) protein (243aa)
DNA repair protein RecO n=1 Tax=Pantoea dispersa EGD-AAK13 RepID=U1U7A4_9ENTR
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1358411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea dispersa EGD-AAK13.;"
DNA repair protein RecO
L3_072_000G1_scaffold_361_21
Pantoea sp. PSNIH1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21933..22838)
DNA (906bp) protein (302aa)
GTPase Era n=1 Tax=Pantoea sp. Sc1 RepID=H8DM30_9ENTR
hypothetical protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1484158 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH1.;"
L3_072_000G1_scaffold_361_22
Pantoea sp. AS-PWVM4, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22884..23564)
DNA (681bp) protein (227aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1332069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. AS-PWVM4.;"
ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Pantoea dispersa EGD-AAK13 RepID=U1U8A5_9ENTR
L3_072_000G1_scaffold_361_23
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23698..24672)
DNA (975bp) protein (325aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
Signal peptidase I n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WF49_PANSA
signal peptidase I
L3_072_000G1_scaffold_361_24
Pantoea stewartii, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24682..26481)
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=660596 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea stewartii subsp. stewartii DC283.;"
Elongation factor 4 n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=H3RG80_ERWST
GTP-binding protein LepA
L3_072_000G1_scaffold_361_25
Pantoea ananatis, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26699..27163)
DNA (465bp) protein (155aa)
Sigma factor RpoE regulatory protein RseC n=1 Tax=Pantoea agglomerans 299R RepID=L7BX30_ENTAG
SoxR reducing system protein RseC {ECO:0000313|EMBL:KJH62856.1}; TaxID=553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea ananas (Erwinia uredovora).;"
rseC; sigma-E factor regulatory protein RseC
L3_072_000G1_scaffold_361_26
Enterobacter cancerogenus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27160..28116)
DNA (957bp) protein (319aa)
Sigma E regulatory protein, MucB/RseB n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WF52_PANSA
rseB; anti-sigma E factor
Anti-sigma E factor {ECO:0000313|EMBL:KGT90133.1}; TaxID=69218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cancerogenus.;"
L3_072_000G1_scaffold_361_27
Pantoea sp. 3.5.1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28116..28769)
DNA (654bp) protein (218aa)
Sigma-E factor negative regulatory protein n=1 Tax=Pantoea vagans (strain C9-1) RepID=E1SB93_PANVC
Anti-sigma-E factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Regulator of SigE {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E anti-sigma factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E factor negative regulatory protein {ECO:0000256|PIRNR:PIRNR016938}; TaxID=1522060 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. 3.5.1.;"
rseA; sigma-E factor negative regulatory protein
L3_072_000G1_scaffold_361_28
Pantoea sp. AS-PWVM4, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28797..29375)
DNA (579bp) protein (193aa)
ECF subfamily RNA polymerase sigma-24 factor n=3 Tax=Enterobacteriaceae RepID=U3TZU0_9ENTR
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1332069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. AS-PWVM4.;"
L3_072_000G1_scaffold_361_29
Pantoea agglomerans, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29806..31428
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1408177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea; Pantoea agglomerans group.;" source="Pantoea agglomerans Eh318.;"
L-aspartate oxidase n=2 Tax=Enterobacter agglomerans RepID=U4W1C6_ENTAG
L-aspartate oxidase NadB
L3_072_000G1_scaffold_361_30
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31413..32141)
DNA (729bp) protein (243aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WF56_PANSA
methyltransferase small
Displaying items 1-30 of 54 in total

View Taxonomy