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L3_072_000G1_scaffold_2284

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_2284_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..206)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76079.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transposase IS200-family protein
L3_072_000G1_scaffold_2284_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(408..1709)
DNA (1302bp) protein (434aa)
Transposase, IS4 family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GC60_9FIRM
Transposase, IS4 family {ECO:0000313|EMBL:EEV00704.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transposase IS4 family protein
L3_072_000G1_scaffold_2284_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1817..3265
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J942_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78844.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
resolvase domain-containing protein
L3_072_000G1_scaffold_2284_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3301..3873
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79974.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Mn-containing catalase
L3_072_000G1_scaffold_2284_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4152..5510
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J974_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78876.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
K+ transport systems, NAD-binding component
L3_072_000G1_scaffold_2284_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5523..6962
DNA (1440bp) protein (480aa)
TrkH family potassium uptake protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J975_9FIRM
TrkH family potassium uptake protein {ECO:0000313|EMBL:EES78877.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Trk-type K+ transport systems, membrane components
L3_072_000G1_scaffold_2284_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7137..8162)
DNA (1026bp) protein (342aa)
Radical SAM domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNZ4_9FIRM
Radical SAM domain-containing protein {ECO:0000313|EMBL:CDD79969.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_2284_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8281..8991)
DNA (711bp) protein (237aa)
RNA polymerase sigma factor n=2 Tax=Ruminococcus RepID=C6J977_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
RNA polymerase, sigma 29 subunit, SigE
L3_072_000G1_scaffold_2284_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9009..9866)
DNA (858bp) protein (286aa)
Sigma-E processing peptidase SpoIIGA n=2 Tax=Ruminococcus RepID=C6J978_9FIRM
Sigma-E processing peptidase SpoIIGA {ECO:0000313|EMBL:EES78880.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Sporulation factor SpoIIGA.
L3_072_000G1_scaffold_2284_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10162..11034
DNA (873bp) protein (291aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CSE9_9FIRM
L3_072_000G1_scaffold_2284_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11050..11583)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J980_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78882.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_000G1_scaffold_2284_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11522..12037)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J981_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78883.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_000G1_scaffold_2284_13
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12202..12342)
DNA (141bp) protein (47aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00035D72EB
Uncharacterized protein {ECO:0000313|EMBL:ERI95907.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Displaying 13 items

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