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L3_072_000G1_scaffold_408

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_408_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(216..2384)
DNA (2169bp) protein (723aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Ruminococcus RepID=C6JGJ5_9FIRM
L3_072_000G1_scaffold_408_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2399..3937)
DNA (1539bp) protein (513aa)
Exopolyphosphatase (EC:3.6.1.11)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75876.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_408_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3974..5281)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75877.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted ATPase (AAA+ superfamily)
L3_072_000G1_scaffold_408_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5467..6597)
DNA (1131bp) protein (377aa)
Prephenate dehydratase (EC:4.2.1.51)
Chorismate mutase n=2 Tax=Ruminococcus RepID=C6JGJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78373.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_408_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6619..7902)
DNA (1284bp) protein (428aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CK29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78371.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_408_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8068..8454
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JGK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78369.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Protein of unknown function (DUF1113).
L3_072_000G1_scaffold_408_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8533..9456
DNA (924bp) protein (308aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGK1_9FIRM
L3_072_000G1_scaffold_408_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9450..9887
DNA (438bp) protein (146aa)
Aspartate carbamoyltransferase, regulatory subunit n=2 Tax=Ruminococcus RepID=C6JGK2_9FIRM
Aspartate carbamoyltransferase, regulatory subunit {ECO:0000313|EMBL:EES75882.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Aspartate carbamoyltransferase, regulatory subunit
L3_072_000G1_scaffold_408_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10465..12132)
DNA (1668bp) protein (556aa)
Uridine kinase (EC:2.7.1.48)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75883.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_408_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12251..13033)
DNA (783bp) protein (261aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Ruminococcus RepID=C6JGK4_9FIRM
conserved hypothetical protein TIGR00486
L3_072_000G1_scaffold_408_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13020..13727)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75885.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted SAM-dependent methyltransferase
L3_072_000G1_scaffold_408_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13738..14865)
DNA (1128bp) protein (376aa)
RNA polymerase sigma factor SigA n=2 Tax=Ruminococcus RepID=C6JGK6_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_072_000G1_scaffold_408_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14905..16701)
DNA (1797bp) protein (599aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHA1_9FIRM
L3_072_000G1_scaffold_408_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16724..17731)
DNA (1008bp) protein (336aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGK8_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_408_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18151..18846
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CEQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76694.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Putative peptidoglycan-binding domain-containing protein
L3_072_000G1_scaffold_408_16
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18800..20500)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0JFP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT26653.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L3_072_000G1_scaffold_408_17
unknown

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comp(20555..20791)
DNA (237bp) protein (79aa)

This feature has no annotations

L3_072_000G1_scaffold_408_18
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20860..21867)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=N2A0Z5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ20088.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L3_072_000G1_scaffold_408_19
unknown

Not on your lists

comp(21870..23723)
DNA (1854bp) protein (618aa)

This feature has no annotations

L3_072_000G1_scaffold_408_20
unknown

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23873..25372
DNA (1500bp) protein (500aa)

This feature has no annotations

L3_072_000G1_scaffold_408_21
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25483..26118)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AJA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87409.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
bin3; putative transposon Tn552 DNA-invertase Bin3
L3_072_000G1_scaffold_408_22
unknown

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comp(26094..26483)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=UPI0003B5FA37
L3_072_000G1_scaffold_408_23
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26519..27448)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7GSX3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDE30195.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
L3_072_000G1_scaffold_408_24
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27464..28279)
DNA (816bp) protein (272aa)
Recombinase, phage RecT family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMH8_9FIRM
Recombinase, phage RecT family {ECO:0000313|EMBL:EEQ59222.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
RecT protein
L3_072_000G1_scaffold_408_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28299..29237)
DNA (939bp) protein (313aa)
Putative phage-type endonuclease n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K715_9FIRM
putative phage-type endonuclease
Putative phage-type endonuclease {ECO:0000313|EMBL:CBL00628.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_072_000G1_scaffold_408_26
unknown

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comp(29203..29559)
DNA (357bp) protein (119aa)

This feature has no annotations

L3_072_000G1_scaffold_408_27
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29570..30502)
DNA (933bp) protein (311aa)
Phage/plasmid-like protein n=2 Tax=Dorea sp. 5-2 RepID=R9NNQ4_9FIRM
Phage/plasmid-like protein {ECO:0000313|EMBL:EOS81652.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
phage/plasmid-related protein TIGR03299
L3_072_000G1_scaffold_408_28
unknown

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comp(30516..30617)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_072_000G1_scaffold_408_29
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30695..31936)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K9J3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS43125.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
L3_072_000G1_scaffold_408_30
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32413..34923)
DNA (2511bp) protein (837aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii CAG:12 RepID=R6GV28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB17952.1}; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
hypothetical protein
Displaying items 1-30 of 48 in total

View Taxonomy