ggKbase home page

L3_072_000G1_scaffold_476

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_476_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(285..1670)
DNA (1386bp) protein (462aa)
sodium:alanine symporter n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FEEF28
Amino acid carrier protein {ECO:0000313|EMBL:EES76981.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
amino acid carrier protein
L3_072_000G1_scaffold_476_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2014..3966
DNA (1953bp) protein (651aa)
Alpha-glucosidases, family 31 of glycosyl hydrolases (EC:3.2.1.20)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76982.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_476_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4134..5486)
DNA (1353bp) protein (451aa)
UPF0272 protein RSAG_01751 n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCT4_9FIRM
UPF0272 protein RSAG_01751 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
conserved hypothetical protein TIGR00299
L3_072_000G1_scaffold_476_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5489..6250)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76984.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
NCAIR mutase (PurE)-related proteins
L3_072_000G1_scaffold_476_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6228..6362)
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76782.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_476_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6359..7573)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76783.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L3_072_000G1_scaffold_476_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7760..9160)
DNA (1401bp) protein (467aa)
rhamnulokinase (EC:2.7.1.5)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CF23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD76784.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_476_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9463..10578)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76988.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L3_072_000G1_scaffold_476_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10785..11765)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76989.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
L3_072_000G1_scaffold_476_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11777..13288)
DNA (1512bp) protein (504aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCU1_9FIRM
L3_072_000G1_scaffold_476_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13309..14286)
DNA (978bp) protein (326aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76991.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_476_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14469..15446)
DNA (978bp) protein (326aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPS2_9FIRM
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:CDD79955.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC-type sugar transport system, periplasmic component
L3_072_000G1_scaffold_476_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15433..17238)
DNA (1806bp) protein (602aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCU4_9FIRM
L3_072_000G1_scaffold_476_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17235..18908)
DNA (1674bp) protein (558aa)
Two component transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR76_9FIRM
Two component transcriptional regulator {ECO:0000313|EMBL:CDD79953.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_072_000G1_scaffold_476_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19230..19673
DNA (444bp) protein (148aa)
Fucose dissimilation pathway protein FucU (EC:5.1.3.-)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JHU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES75393.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_476_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19970..21766)
DNA (1797bp) protein (599aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNE4_9FIRM
L3_072_000G1_scaffold_476_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22166..23014
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76996.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
helix-turn-helix domain protein
L3_072_000G1_scaffold_476_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23134..24216)
DNA (1083bp) protein (361aa)
ATP:cob(I)alamin adenosyltransferase n=2 Tax=Ruminococcus RepID=C6JCU8_9FIRM
Ethanolamine utilization protein eutT {ECO:0000313|EMBL:CDD78941.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ATP:cob(I)alamin adenosyltransferase
L3_072_000G1_scaffold_476_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24285..25436)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78940.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Alcohol dehydrogenase, class IV
L3_072_000G1_scaffold_476_20
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25461..26225)
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78939.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Transcriptional regulators of sugar metabolism
L3_072_000G1_scaffold_476_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26293..26841)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCV1_9FIRM
Microcompartments protein {ECO:0000313|EMBL:CDD78938.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26858..28186)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CMH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78937.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
L3_072_000G1_scaffold_476_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28191..28457)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78936.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28590..29234)
DNA (645bp) protein (215aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Phosphate propanoyltransferase n=2 Tax=Ruminococcus RepID=C6JCV4_9FIRM
Propanediol utilization protein
L3_072_000G1_scaffold_476_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29320..29796)
DNA (477bp) protein (159aa)
Propanediol utilization protein PduA n=2 Tax=Ruminococcus RepID=C6JCV5_9FIRM
Microcompartments protein {ECO:0000313|EMBL:CDD78934.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29796..30098)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77005.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_27
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30135..30410)
DNA (276bp) protein (92aa)
Propanediol utilization protein PduA n=2 Tax=Ruminococcus RepID=C6JCV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78931.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30483..30797)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JCV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78929.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L3_072_000G1_scaffold_476_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30893..32116)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77008.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenases
L3_072_000G1_scaffold_476_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32144..33532)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JCW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77009.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
NAD-dependent aldehyde dehydrogenases
Displaying items 1-30 of 41 in total

View Taxonomy