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L3_072_000G1_scaffold_810

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_810_1
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

297..569
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F99FAC
Signal transduction histidine kinase {ECO:0000313|EMBL:CCY14630.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
Signal transduction histidine kinase
L3_072_000G1_scaffold_810_2
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

714..1640
DNA (927bp) protein (309aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LQC3_9FIRM
prepilin-type N-terminal cleavage/methylation domain
Prepilin-type N-terminal cleavage/methylation domain {ECO:0000313|EMBL:CBL22981.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_072_000G1_scaffold_810_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1710..2288)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9X5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78268.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transcriptional antiterminator, BglG family
L3_072_000G1_scaffold_810_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2577..4820)
DNA (2244bp) protein (748aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9X6_9FIRM
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EES78269.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)
L3_072_000G1_scaffold_810_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5296..7275)
DNA (1980bp) protein (660aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9X7_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EES78270.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
diguanylate cyclase (GGDEF) domain
L3_072_000G1_scaffold_810_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8144..8314)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CID5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77766.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_810_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8646..10568)
DNA (1923bp) protein (641aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78271.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L3_072_000G1_scaffold_810_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10851..11441)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77769.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_810_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11581..11820)
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Y0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77770.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_810_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11980..12264)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79180.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_810_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12279..12539)
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6TJ84_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC73458.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L3_072_000G1_scaffold_810_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13365..14297)
DNA (933bp) protein (311aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJ78_9FIRM
L3_072_000G1_scaffold_810_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14323..16281)
DNA (1959bp) protein (653aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LVN6_9FIRM
L3_072_000G1_scaffold_810_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17205..18449
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78278.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted xylanase/chitin deacetylase
L3_072_000G1_scaffold_810_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18598..19503)
DNA (906bp) protein (302aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77775.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_810_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19873..21495)
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Y7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78280.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
transporter, NhaC family (TC 2.A.35)
L3_072_000G1_scaffold_810_17
unknown

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comp(21485..21613)
DNA (129bp) protein (43aa)

This feature has no annotations

L3_072_000G1_scaffold_810_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21613..22461)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJ83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77777.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_810_19
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22480..23571)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78282.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_000G1_scaffold_810_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23568..25985)
DNA (2418bp) protein (806aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78283.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_810_21
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25988..26455)
DNA (468bp) protein (156aa)
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs (EC:1.2.99.2)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Z1_9FIRM
Xanthine dehydrogenase iron-sulfur-binding subunit {ECO:0000313|EMBL:CDD77780.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_810_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26445..27263)
DNA (819bp) protein (273aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Z2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77782.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
L3_072_000G1_scaffold_810_23
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27862..28449
DNA (588bp) protein (196aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Z3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77784.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_810_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28529..29629)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Z4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78287.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_072_000G1_scaffold_810_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29727..30269)
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6J9Z6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78289.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Membrane-associated phospholipid phosphatase
L3_072_000G1_scaffold_810_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30518..31900
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CKG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77788.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
putative efflux protein, MATE family
L3_072_000G1_scaffold_810_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32058..32489)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9Z8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78291.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
Displaying 27 items

View Taxonomy