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L3_072_000G1_scaffold_825

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000G1_scaffold_825_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(373..1587)
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJH5_9FIRM
L3_072_000G1_scaffold_825_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2009..3448)
DNA (1440bp) protein (480aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQH3_9FIRM
L3_072_000G1_scaffold_825_3
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3448..4917)
DNA (1470bp) protein (490aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.7 6.3.5.- 6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Ruminococcus RepID=C6JBM4_9FIRM
L3_072_000G1_scaffold_825_4
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4929..5222)
DNA (294bp) protein (98aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.7 6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CRG0_9FIRM
L3_072_000G1_scaffold_825_5
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5282..6613)
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.23)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7CS20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80228.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L3_072_000G1_scaffold_825_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7007..7561)
DNA (555bp) protein (185aa)
Response regulator receiver/ANTAR domain-containing protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPU2_9FIRM
Response regulator receiver/ANTAR domain-containing protein {ECO:0000313|EMBL:CDD80229.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Response regulator with putative antiterminator output domain
L3_072_000G1_scaffold_825_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7810..9132)
DNA (1323bp) protein (441aa)
Glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, type I n=2 Tax=Ruminococcus RepID=C6JBM8_9FIRM
Glutamine synthetase, type I {ECO:0000313|EMBL:EES78015.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_825_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9425..9787)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80233.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000G1_scaffold_825_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9771..10028)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78017.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
YcfA-like protein.
L3_072_000G1_scaffold_825_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10367..11851)
DNA (1485bp) protein (495aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.13 1.4.1.14)
Glutamate synthase, NADH/NADPH, small subunit n=2 Tax=Ruminococcus RepID=C6JBN7_9FIRM
Glutamate synthase, NADH/NADPH, small subunit {ECO:0000313|EMBL:EES78024.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_825_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11973..16526)
DNA (4554bp) protein (1518aa)
Glutamate synthase domain 2 (EC:1.4.1.13 1.4.1.14)
glutamate synthase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DAB807
Uncharacterized protein {ECO:0000313|EMBL:EES78025.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_825_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16676..18283)
DNA (1608bp) protein (536aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=2 Tax=Ruminococcus RepID=C6JBN9_9FIRM
L3_072_000G1_scaffold_825_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18657..18884)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78466.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
PTS HPr component phosphorylation site.
L3_072_000G1_scaffold_825_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19154..20575)
DNA (1422bp) protein (474aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CKG7_9FIRM
L3_072_000G1_scaffold_825_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20992..23091
DNA (2100bp) protein (700aa)
L-glutamine synthetase (EC:6.3.1.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78029.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_072_000G1_scaffold_825_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23390..25102
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CM61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78463.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ammonium transporter
L3_072_000G1_scaffold_825_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25165..25824)
DNA (660bp) protein (220aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003194056
Uncharacterized protein {ECO:0000313|EMBL:EES78041.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted membrane protein
L3_072_000G1_scaffold_825_18
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25912..26169)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FBE247
Sugar-binding domain protein {ECO:0000313|EMBL:EDM85893.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
transcriptional regulator, LacI family
L3_072_000G1_scaffold_825_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26185..26997)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000368AFE9
Uncharacterized protein {ECO:0000313|EMBL:EEU98290.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_072_000G1_scaffold_825_20
unknown

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comp(27335..27994)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E808D6
L3_072_000G1_scaffold_825_21
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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comp(28040..28600)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E78DB7
Uncharacterized protein {ECO:0000313|EMBL:CDF07471.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
L3_072_000G1_scaffold_825_22
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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28751..28921
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DAD92C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN98144.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_072_000G1_scaffold_825_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28902..30062
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DAD92C
Uncharacterized protein {ECO:0000313|EMBL:EEG93010.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L3_072_000G1_scaffold_825_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30401..30841)
DNA (441bp) protein (147aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PCU6_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CDC16386.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
RNA polymerase sigma factor, sigma-70 family
L3_072_000G1_scaffold_825_25
unknown

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comp(30936..31073)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_072_000G1_scaffold_825_26
unknown

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31246..31455
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000382AC49
L3_072_000G1_scaffold_825_27
unknown

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31550..31777
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003710D1B
Displaying 27 items

View Taxonomy