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L3_072_000M1_scaffold_7444

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_7444_1
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..162
DNA (162bp) protein (54aa)
Predicted O-methyltransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NP86_9CLOT
methyltransferase small
Methyltransferase small {ECO:0000313|EMBL:CDZ23988.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_072_000M1_scaffold_7444_2
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

201..866
DNA (666bp) protein (222aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M187_9FIRM
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
L3_072_000M1_scaffold_7444_3
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(883..1224)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KU97_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
50S ribosomal protein L17
L3_072_000M1_scaffold_7444_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1244..2200)
DNA (957bp) protein (319aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCT4_9FIRM
L3_072_000M1_scaffold_7444_5
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2270..2896)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LBN8_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
30S ribosomal protein S4
L3_072_000M1_scaffold_7444_6
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2912..3313)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LJR3_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
rpsK; 30S ribosomal protein S11
L3_072_000M1_scaffold_7444_7
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3329..3697)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Clostridium sp. CAG:242 RepID=R6CVH9_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
SSU ribosomal protein S13P
L3_072_000M1_scaffold_7444_8
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(3726..3839)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=4 Tax=environmental samples RepID=R5ELT1_9FIRM
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L3_072_000M1_scaffold_7444_9
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3895..4134)
DNA (240bp) protein (80aa)
Translation initiation factor IF-1 n=1 Tax=Clostridium sp. CAG:964 RepID=R6UE67_9CLOT
hypothetical protein
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L3_072_000M1_scaffold_7444_10
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4131..4391)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37758
Uncharacterized protein {ECO:0000313|EMBL:EWM52766.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L3_072_000M1_scaffold_7444_11
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(4409..5158)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Methionine aminopeptidase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YSK2_9FIRM
methionine aminopeptidase
L3_072_000M1_scaffold_7444_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5163..5798)
DNA (636bp) protein (212aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Adenylate kinase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZFB6_9FIRM
adenylate kinase
L3_072_000M1_scaffold_7444_13
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5823..7127)
DNA (1305bp) protein (435aa)
Protein translocase subunit SecY n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCU2_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
preprotein translocase subunit SecY
L3_072_000M1_scaffold_7444_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7127..7471)
DNA (345bp) protein (115aa)
50S ribosomal protein L15 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8M4_9CLOT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
rplO; 50S ribosomal protein L15
L3_072_000M1_scaffold_7444_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7491..7670)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1 Tax=Ruminococcus albus 8 RepID=E9SA45_RUMAL
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
50S ribosomal protein L30
L3_072_000M1_scaffold_7444_16
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7685..8185)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Clostridium sp. MSTE9 RepID=J1H0A2_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
rpsE; 30S ribosomal protein S5
L3_072_000M1_scaffold_7444_17
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8202..8561)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=2 Tax=Ruminococcus albus RepID=E6UB74_RUMA7
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_072_000M1_scaffold_7444_18
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8580..9122)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=2 Tax=root RepID=R5N267_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
rplF; 50S ribosomal protein L6
L3_072_000M1_scaffold_7444_19
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9137..9535)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCU8_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
SSU ribosomal protein S8P
L3_072_000M1_scaffold_7444_20
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9557..9742)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y881_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
30S ribosomal protein S14
L3_072_000M1_scaffold_7444_21
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9757..10296)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCV0_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Ribosomal protein L5
L3_072_000M1_scaffold_7444_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10311..10625)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=4 Tax=Eubacterium RepID=D4JX69_9FIRM
LSU ribosomal protein L24P
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_072_000M1_scaffold_7444_23
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10642..11010)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KVZ5_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
rplN; ribosomal protein L14
L3_072_000M1_scaffold_7444_24
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11111..11368)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCV3_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
30S ribosomal protein S17
L3_072_000M1_scaffold_7444_25
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11389..11586)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EU81_CLOS4
hypothetical protein
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_072_000M1_scaffold_7444_26
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11586..12011)
DNA (426bp) protein (142aa)
50S ribosomal protein L16 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KU76_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
LSU ribosomal protein L16P
L3_072_000M1_scaffold_7444_27
unknown

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comp(12011..12079)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 27 items

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