ggKbase home page

L3_072_000M1_scaffold_1131

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1131_1
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..173
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0X1N0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ65427.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
L3_072_000M1_scaffold_1131_2
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


256..612
DNA (357bp) protein (119aa)
30S ribosomal protein S6 n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EUA8_9BACE
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
30S ribosomal protein S6
L3_072_000M1_scaffold_1131_3
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


616..885
DNA (270bp) protein (90aa)
30S ribosomal protein S18 n=2 Tax=Bacteroidales RepID=K0X0E6_9PORP
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
L3_072_000M1_scaffold_1131_4
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


908..1351
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=2 Tax=Bacteroidales RepID=K0X0B2_9PORP
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
50S ribosomal protein L9
L3_072_000M1_scaffold_1131_5
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1488..2420
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F7G4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX96146.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_6
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2525..3001
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0XM35_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ64895.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
hypothetical protein
L3_072_000M1_scaffold_1131_7
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3049..3552
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F5W4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX96147.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_8
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3688..4872)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EUB3_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX96148.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_9
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5087..5935
DNA (849bp) protein (283aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
endonuclease V (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FMN5_9ACTN
L3_072_000M1_scaffold_1131_10
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

5986..7323
DNA (1338bp) protein (446aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FRN9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY06309.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L3_072_000M1_scaffold_1131_11
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

7429..8376
DNA (948bp) protein (316aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
Cysteine synthase n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FN51_9ACTN
cysteine synthase
L3_072_000M1_scaffold_1131_12
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8383..11064)
DNA (2682bp) protein (894aa)
4-alpha-glucanotransferase n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0XAQ2_9PORP
4-alpha-glucanotransferase {ECO:0000313|EMBL:EJZ64889.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
4-alpha-glucanotransferase
L3_072_000M1_scaffold_1131_13
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11206..13743)
DNA (2538bp) protein (846aa)
Ribonucleoside-diphosphate reductase n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EUB8_9BACE
Ribonucleoside-diphosphate reductase adenosylcobalamin-dependent {ECO:0000313|EMBL:CCX96153.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
ribonucleoside-diphosphate reductase
L3_072_000M1_scaffold_1131_14
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14148..14897
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0X0A5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ64887.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
oxidoreductase
L3_072_000M1_scaffold_1131_15
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14963..16360)
DNA (1398bp) protein (466aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Bacteroides sp. CAG:20 RepID=R5ETY7_9BACE
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
chromosomal replication initiation protein
L3_072_000M1_scaffold_1131_16
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16708..17592)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FN45_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCX96156.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
mammalian cell entry protein
L3_072_000M1_scaffold_1131_17
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17625..18764)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0XAP8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX96157.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
N-acetylmuramoyl-L-alanine amidase
L3_072_000M1_scaffold_1131_18
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19041..20057
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5G1E8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCX96158.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_19
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20070..20813
DNA (744bp) protein (248aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FMM6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY06300.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
L3_072_000M1_scaffold_1131_20
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20827..21714
DNA (888bp) protein (296aa)
LysR substrate binding domain protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5ETZ1_9BACE
LysR substrate binding domain protein {ECO:0000313|EMBL:CCX96160.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
transcriptional regulator
L3_072_000M1_scaffold_1131_21
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21743..23842
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5F7H4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX96161.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_22
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23900..24406)
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0XAP4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ64879.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
hypothetical protein
L3_072_000M1_scaffold_1131_23
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24499..25074)
DNA (576bp) protein (192aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
Dephospho-CoA kinase n=2 Tax=Bacteroidales RepID=K0X0C1_9PORP
dephospho-CoA kinase
L3_072_000M1_scaffold_1131_24
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25071..26135)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EXY0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCX96164.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
hypothetical protein
L3_072_000M1_scaffold_1131_25
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26254..26580)
DNA (327bp) protein (109aa)
Preprotein translocase YajC subunit n=2 Tax=Bacteria RepID=R5ETZ4_9BACE
Preprotein translocase YajC subunit {ECO:0000313|EMBL:CCX96165.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
preprotein translocase subunit YajC
L3_072_000M1_scaffold_1131_26
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26650..27576)
DNA (927bp) protein (309aa)
Transcription antitermination factor NusB n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FN33_9ACTN
N utilization substance protein B homolog {ECO:0000256|SAAS:SAAS00057003}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
nitrogen utilization substance protein
L3_072_000M1_scaffold_1131_27
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27716..28003)
DNA (288bp) protein (96aa)
Uncharacterized protein n=3 Tax=Bacteria RepID=K0XAP0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCY06292.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
RNA polymerase rpb6
L3_072_000M1_scaffold_1131_28
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(28012..28815)
DNA (804bp) protein (268aa)
Outer membrane assembly lipoprotein YfiO n=2 Tax=Bacteria RepID=K0X0B5_9PORP
Outer membrane assembly lipoprotein YfiO {ECO:0000313|EMBL:CCY06291.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
membrane protein
L3_072_000M1_scaffold_1131_29
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

29131..32385
DNA (3255bp) protein (1085aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
UvrD/REP helicase n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FML7_9ACTN
L3_072_000M1_scaffold_1131_30
Bacteroides sp. CAG:20, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32565..32759
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K0X093_9PORP
PspC domain protein {ECO:0000313|EMBL:CCX96170.1}; TaxID=1262738 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:20.;"
phage-shock protein
Displaying items 1-30 of 42 in total

View Taxonomy