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L3_072_000M1_scaffold_1230

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1230_1
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..114)
DNA (114bp) protein (38aa)
Bacterial Ig-like domain (Group 3) n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7E9_9CLOT
Bacterial Ig-like domain (Group 3) {ECO:0000313|EMBL:CCY44832.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_1230_2
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(219..1688)
DNA (1470bp) protein (490aa)
Metalloprotease yebA n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXL4_9CLOT
Metalloprotease yebA {ECO:0000313|EMBL:CCY45094.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
peptidase M23
L3_072_000M1_scaffold_1230_3
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1758..4637)
DNA (2880bp) protein (960aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III alpha subunit n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISP4_9CLOT
L3_072_000M1_scaffold_1230_4
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4691..4918
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7V4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45096.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_1230_5
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4946..5512)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IS81_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45098.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
hypothetical protein
L3_072_000M1_scaffold_1230_6
unknown

Not on your lists

comp(5561..6184)
DNA (624bp) protein (208aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_7
Clostridium sp. CAG:492, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6189..6581)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:492 RepID=R5Z0M7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA30254.1}; TaxID=1262813 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:492.;"
hypothetical protein
L3_072_000M1_scaffold_1230_8
Firmicutes bacterium CAG:884, Firmicutes, Bacteria

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comp(6608..7867)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:884 RepID=R5NAL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY94237.1}; TaxID=1262990 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:884.;"
L3_072_000M1_scaffold_1230_9
Staphylococcus pettenkoferi, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(8029..8337)
DNA (309bp) protein (103aa)
Thioredoxin n=1 Tax=Staphylococcus pettenkoferi VCU012 RepID=H0DK16_9STAP
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=904314 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus pettenkoferi VCU012.;"
thioredoxin
L3_072_000M1_scaffold_1230_10
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8340..9047)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISW9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45180.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
colicin V production protein
L3_072_000M1_scaffold_1230_11
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9169..10116
DNA (948bp) protein (316aa)
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
rnhC; Ribonuclease HIII (EC:3.1.26.4)
Ribonuclease HIII n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISZ1_9CLOT
L3_072_000M1_scaffold_1230_12
Clostridium sp. CAG:524, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10139..10924)
DNA (786bp) protein (262aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:524 RepID=R6B937_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CDA60708.1}; TaxID=1262817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:524.;"
conserved hypothetical protein
L3_072_000M1_scaffold_1230_13
unknown

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comp(11227..11388)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_14
unknown

Not on your lists

comp(11369..11509)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_15
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11555..12715)
DNA (1161bp) protein (387aa)
Rhomboid protein membrane-associated serine peptidase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J838_9CLOT
Rhomboid protein membrane-associated serine peptidase {ECO:0000313|EMBL:CCY45206.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
rhomboid family protein
L3_072_000M1_scaffold_1230_16
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12708..13613)
DNA (906bp) protein (302aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.23)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J8L4_9CLOT
L3_072_000M1_scaffold_1230_17
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13579..14067)
DNA (489bp) protein (163aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
Lipoprotein signal peptidase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISH4_9CLOT
lipoprotein signal peptidase
L3_072_000M1_scaffold_1230_18
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14127..14777)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45209.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_1230_19
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14789..15730)
DNA (942bp) protein (314aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISZ6_9CLOT
L3_072_000M1_scaffold_1230_20
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15730..16083)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J842_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45211.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_1230_21
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16095..17138)
DNA (1044bp) protein (348aa)
Membrane-associated zinc metalloprotease n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J8L9_9CLOT
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:CCY45212.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
membrane-associated Zn-dependent protease
L3_072_000M1_scaffold_1230_22
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17147..17935)
DNA (789bp) protein (263aa)
phosphatidate cytidylyltransferase (EC:2.7.7.41)
Cytidylyltransferase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISH9_9CLOT
Cytidylyltransferase {ECO:0000313|EMBL:CCY45213.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_1230_23
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18107..18352)
DNA (246bp) protein (82aa)
UPF0109 protein HMPREF9402_2339 n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXW8_9CLOT
UPF0109 protein HMPREF9402_2339 {ECO:0000313|EMBL:CCY45214.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
hypothetical protein
L3_072_000M1_scaffold_1230_24
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(18355..18627)
DNA (273bp) protein (91aa)
30S ribosomal protein S16 n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7W116_PAETH
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
rpsP; 30S ribosomal protein S16
L3_072_000M1_scaffold_1230_25
Mycoplasma sp. CAG:472, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(18748..19497)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Mycoplasma sp. CAG:472 RepID=R7HFB0_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:CDE38304.1}; TaxID=1262904 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:472.;"
hypothetical protein
L3_072_000M1_scaffold_1230_26
unknown

Not on your lists

comp(19552..19764)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_27
unknown

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comp(19879..20025)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_28
unknown

Not on your lists

comp(20019..20420)
DNA (402bp) protein (134aa)

This feature has no annotations

L3_072_000M1_scaffold_1230_29
Clostridium sp. CAG:762, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20517..21401
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:762 RepID=R5SV44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ57600.1}; TaxID=1262837 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:762.;"
L3_072_000M1_scaffold_1230_30
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21428..22594)
DNA (1167bp) protein (389aa)
Cysteine desulfurase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IYH9_9CLOT
Cysteine desulfurase {ECO:0000313|EMBL:CCY45399.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
Putative aminotransferase
Displaying items 1-30 of 46 in total

View Taxonomy