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L3_072_000M1_scaffold_19

Search features with annotation key words

Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_19_1
Bacteroides sp. CAG:545, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

332..1951
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003618CCC
Uncharacterized protein {ECO:0000313|EMBL:CCZ45241.1}; TaxID=1262742 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:545.;"
hypothetical protein
L3_072_000M1_scaffold_19_2
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2218..3261
DNA (1044bp) protein (348aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E8529E
L3_072_000M1_scaffold_19_3
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3242..4048
DNA (807bp) protein (269aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
purine nucleoside phosphorylase I, inosine and guanosine-specific (EC:2.4.2.1)
purine nucleoside phosphorylase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EFFE12
L3_072_000M1_scaffold_19_4
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4076..4591
DNA (516bp) protein (172aa)
single-stranded DNA-binding protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000313B8C1
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
single stranded DNA-binding protein
L3_072_000M1_scaffold_19_5
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4803..5534)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003056F3A
Short-chain dehydrogenases of various substrate specificities
Short-chain dehydrogenases of various substrate specificities {ECO:0000313|EMBL:CCZ97213.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_072_000M1_scaffold_19_6
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5552..5989)
DNA (438bp) protein (146aa)
CMP deaminase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030C2DE1
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EDS03275.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
deoxycytidylate deaminase
L3_072_000M1_scaffold_19_7
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6063..9356)
DNA (3294bp) protein (1098aa)
preprotein translocase subunit SecA n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000303A58C
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
Preprotein translocase subunit SecA
L3_072_000M1_scaffold_19_8
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9621..10454)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003711151
Uncharacterized protein {ECO:0000313|EMBL:EKN20527.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
nitroreductase
L3_072_000M1_scaffold_19_9
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10459..11442)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000315DBE0
Uncharacterized protein {ECO:0000313|EMBL:CCZ97209.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Protein of unknown function (DUF2851).
L3_072_000M1_scaffold_19_10
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11447..11767)
DNA (321bp) protein (107aa)
FeS assembly SUF system protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000310E6F2
Putative FeS assembly SUF system protein {ECO:0000313|EMBL:CDD25105.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
metal-sulfur cluster biosynthetic enzyme
L3_072_000M1_scaffold_19_11
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11819..12244)
DNA (426bp) protein (142aa)
Fe-S metabolism protein SufE n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031C36E3
Fe-S metabolism associated domain protein {ECO:0000313|EMBL:CDD25106.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
SufE protein
L3_072_000M1_scaffold_19_12
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12257..13879)
DNA (1623bp) protein (541aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F33F07
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:EDS03282.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
AP superfamily protein
L3_072_000M1_scaffold_19_13
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13901..14872)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000308DAF0
GSCFA family.
GSCFA family {ECO:0000313|EMBL:CBK64407.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_072_000M1_scaffold_19_14
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15370..16188
DNA (819bp) protein (273aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E528D0
L3_072_000M1_scaffold_19_15
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16259..16705)
DNA (447bp) protein (149aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
ribose 5-phosphate isomerase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F39065
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:CDE66188.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
L3_072_000M1_scaffold_19_16
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17069..17407
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E23512
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL78774.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_072_000M1_scaffold_19_17
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(17477..17791)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00031EBBA8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCZ76715.1}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
L3_072_000M1_scaffold_19_18
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17804..19606)
DNA (1803bp) protein (601aa)
GTP-binding protein TypA n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003604BB5
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:CDD25115.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
GTP-binding protein TypA/BipA
L3_072_000M1_scaffold_19_19
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19700..20725
DNA (1026bp) protein (342aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
3-dehydroquinate synthase (EC:4.2.3.4)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00035FC280
L3_072_000M1_scaffold_19_20
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20741..21625
DNA (885bp) protein (295aa)
Beta-lactamase {ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|SAAS:SAAS00063099};; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000372BCD6
beta-lactamase
L3_072_000M1_scaffold_19_21
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21683..22921)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F431A1
Malic enzyme
Malic enzyme {ECO:0000313|EMBL:CCZ97198.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L3_072_000M1_scaffold_19_22
unknown

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comp(23022..24056)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F6ED7E
L3_072_000M1_scaffold_19_23
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24114..25118)
DNA (1005bp) protein (335aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
Holliday junction DNA helicase RuvB n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030D6ABD
Holliday junction DNA helicase subunit RuvB
L3_072_000M1_scaffold_19_24
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25439..26152)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F66D5D
Uncharacterized protein {ECO:0000313|EMBL:ERI82124.1}; TaxID=1321819 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyogenes F0041.;"
hypothetical protein
L3_072_000M1_scaffold_19_25
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26294..26845
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003688FE0
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDD25122.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
sigma-70 family RNA polymerase sigma factor
L3_072_000M1_scaffold_19_26
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26857..28116
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003796F62
Uncharacterized protein {ECO:0000313|EMBL:EFR58382.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
hypothetical protein
L3_072_000M1_scaffold_19_27
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28469..29119
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000378C2ED
Uncharacterized protein {ECO:0000313|EMBL:CDD25124.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_072_000M1_scaffold_19_28
unknown

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29338..29439
DNA (102bp) protein (34aa)

This feature has no annotations

L3_072_000M1_scaffold_19_29
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29635..30231
DNA (597bp) protein (199aa)
riboflavin synthase, alpha subunit (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:CBK64337.1}; EC=2.5.1.9 {ECO:0000313|EMBL:CBK64337.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
riboflavin synthase subunit alpha n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030E2CAB
L3_072_000M1_scaffold_19_30
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30293..31339
DNA (1047bp) protein (349aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
histidine kinase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00030D8AD8
histidine kinase
Displaying items 1-30 of 156 in total

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