ggKbase home page

L3_072_000M1_scaffold_157

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_157_1
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1161
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:710 RepID=R5TKZ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ59631.1}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
L3_072_000M1_scaffold_157_2
Firmicutes bacterium CAG:582, Firmicutes, Bacteria

Not on your lists

1258..1371
DNA (114bp) protein (38aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Firmicutes bacterium CAG:582 RepID=R6H2R2_9FIRM
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:CDB27786.1}; TaxID=1262997 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:582.;"
L3_072_000M1_scaffold_157_3
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1578..2177
DNA (600bp) protein (200aa)
Phosphoglycerate mutase n=1 Tax=Clostridium sp. CAG:710 RepID=R5TB24_9CLOT
Phosphoglycerate mutase {ECO:0000313|EMBL:CCZ60449.1}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
phosphoglycerate mutase
L3_072_000M1_scaffold_157_4
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2615..3586
DNA (972bp) protein (324aa)
DNA polymerase III subunit delta n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISC5_9CLOT
DNA polymerase III subunit delta {ECO:0000313|EMBL:CCY45148.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
yqeN; putative protein YqeN
L3_072_000M1_scaffold_157_5
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3617..4849
DNA (1233bp) protein (411aa)
Cell division protein ftsA n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J8L2_9CLOT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
cell division protein FtsA
L3_072_000M1_scaffold_157_6
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4860..5933
DNA (1074bp) protein (358aa)
Cell division protein FtsZ n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J916_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
ftsZ; cell division protein FtsZ
L3_072_000M1_scaffold_157_7
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6050..7090
DNA (1041bp) protein (347aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
rlmN; Ribosomal RNA large subunit methyltransferase N (EC:2.1.1.192)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISM9_9CLOT
L3_072_000M1_scaffold_157_8
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7072..7812
DNA (741bp) protein (247aa)
prpC; protein phosphatase 2C (EC:3.1.3.-)
Protein phosphatase 2C-like protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXK4_9CLOT
Protein phosphatase 2C-like protein {ECO:0000313|EMBL:CCY45079.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_157_9
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7812..9542
DNA (1731bp) protein (577aa)
Protein kinase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IS63_9CLOT
Protein kinase {ECO:0000313|EMBL:CCY45078.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
serine/threonine protein kinase
L3_072_000M1_scaffold_157_10
Clostridium sp. CAG:433, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9542..10381
DNA (840bp) protein (280aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262806 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:433.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium sp. CAG:433 RepID=R6Y011_9CLOT
rsgA; ribosome small subunit-dependent GTPase A
L3_072_000M1_scaffold_157_11
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10390..11034
DNA (645bp) protein (215aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7T8_9CLOT
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:CCY45076.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_157_12
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11113..11499
DNA (387bp) protein (129aa)
Putative MSHA pilin protein MshA n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISM3_9CLOT
Putative MSHA pilin protein MshA {ECO:0000313|EMBL:CCY45075.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
mshA2; type IV pilus, mannose-sensitive hemagglutinin A
L3_072_000M1_scaffold_157_13
Acholeplasma sp. CAG:878, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

11571..12467
DNA (897bp) protein (299aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1262686 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; environmental samples.;" source="Acholeplasma sp. CAG:878.;"
Probable endonuclease 4 n=1 Tax=Acholeplasma sp. CAG:878 RepID=R5HDR6_9MOLU
endonuclease IV
L3_072_000M1_scaffold_157_14
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12459..12713)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7T3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45071.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_157_15
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12846..14795
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISL9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45070.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
hypothetical protein
L3_072_000M1_scaffold_157_16
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14834..14998
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXJ8_9CLOT
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
50S ribosomal protein L33
L3_072_000M1_scaffold_157_17
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15011..15568
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IS55_9CLOT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
efp; elongation factor P
L3_072_000M1_scaffold_157_18
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15637..16140
DNA (504bp) protein (168aa)
SpoIIIAH n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J889_9CLOT
SpoIIIAH {ECO:0000313|EMBL:CCY45067.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
spoIIIAH; stage III sporulation protein AH
L3_072_000M1_scaffold_157_19
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16205..17200
DNA (996bp) protein (332aa)
Stage IV sporulation protein B n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7S8_9CLOT
Stage IV sporulation protein B {ECO:0000313|EMBL:CCY45066.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
spoIVB; stage IV sporulation protein B
L3_072_000M1_scaffold_157_20
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17274..18566
DNA (1293bp) protein (431aa)
Putative aminoacyltransferase FemX n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISL5_9CLOT
Putative aminoacyltransferase FemX {ECO:0000313|EMBL:CCY45065.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
Uncharacterized protein involved in methicillin resistance
L3_072_000M1_scaffold_157_21
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18556..19809)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5IXJ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45064.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
hypothetical protein
L3_072_000M1_scaffold_157_22
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19979..20602
DNA (624bp) protein (208aa)
Stage II sporulation protein M n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J884_9CLOT
Stage II sporulation protein M {ECO:0000313|EMBL:CCY45062.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
stage II sporulation protein M
L3_072_000M1_scaffold_157_23
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20640..21743
DNA (1104bp) protein (368aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J7S3_9CLOT
mnmA; tRNA-specific 2-thiouridylase MnmA
L3_072_000M1_scaffold_157_24
unknown

Not on your lists

comp(21765..21896)
DNA (132bp) protein (44aa)

This feature has no annotations

L3_072_000M1_scaffold_157_25
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22129..22902
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5ISL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY45060.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
L3_072_000M1_scaffold_157_26
Acholeplasma sp. CAG:878, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(23098..25518)
DNA (2421bp) protein (807aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262686 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; environmental samples.;" source="Acholeplasma sp. CAG:878.;"
Superfamily I DNA and RNA helicase (EC:3.6.1.-)
Helicase IV n=1 Tax=Acholeplasma sp. CAG:878 RepID=R5HH48_9MOLU
L3_072_000M1_scaffold_157_27
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25570..28674)
DNA (3105bp) protein (1035aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
Isoleucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:710 RepID=R5T9S4_9CLOT
isoleucyl-tRNA synthetase
L3_072_000M1_scaffold_157_28
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28894..29340)
DNA (447bp) protein (149aa)
DivIVA family protein n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J9N9_9CLOT
DivIVA family protein {ECO:0000313|EMBL:CCY45532.1}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
DivIVA domain-containing protein
L3_072_000M1_scaffold_157_29
Clostridium sp. CAG:1193, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29377..29787)
DNA (411bp) protein (137aa)
Cell division protein SepF n=1 Tax=Clostridium sp. CAG:1193 RepID=R5J951_9CLOT
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1262771 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1193.;"
hypothetical protein
L3_072_000M1_scaffold_157_30
Clostridium sp. CAG:762, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29897..30226)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:762 RepID=R5SVI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ57203.1}; TaxID=1262837 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:762.;"
phosphoribosyl-ATP pyrophosphohydrolase
Displaying items 1-30 of 104 in total

View Taxonomy