ggKbase home page

L3_072_000M1_scaffold_178

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_178_1
unknown

Not on your lists

comp(166..633)
DNA (468bp) protein (156aa)

This feature has no annotations

L3_072_000M1_scaffold_178_2
unknown

Not on your lists

comp(692..1195)
DNA (504bp) protein (168aa)

This feature has no annotations

L3_072_000M1_scaffold_178_3
unknown

Not on your lists

comp(1216..1746)
DNA (531bp) protein (177aa)

This feature has no annotations

L3_072_000M1_scaffold_178_4
Mucor circinelloides, Mucor, Mucorales, Fungi

Not on your lists

comp(2314..2691)
DNA (378bp) protein (126aa)
DNA topoisomerase I (EC:5.99.1.2)
Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) RepID=S2IXX5_MUCC1
Uncharacterized protein {ECO:0000313|EMBL:EPB82601.1}; TaxID=1220926 species="Eukaryota; Fungi; Fungi incertae sedis; Early diverging fungal lineages; Mucoromycotina; Mucorales; Mucorineae; Mucoraceae; Mucor.;" source="Mucor circinelloides f. circinelloides (strain 1006PhL) (Mucormycosis; agent) (Calyptromyces circinelloides).;"
L3_072_000M1_scaffold_178_5
unknown

Not on your lists

3424..14298
DNA (10875bp) protein (3625aa)

This feature has no annotations

L3_072_000M1_scaffold_178_6
unknown

Not on your lists

comp(14492..15775)
DNA (1284bp) protein (428aa)

This feature has no annotations

L3_072_000M1_scaffold_178_7
unknown

Not on your lists

comp(15790..17025)
DNA (1236bp) protein (412aa)

This feature has no annotations

L3_072_000M1_scaffold_178_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17284..17946
DNA (663bp) protein (221aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RXV8_9FIRM
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EHL65566.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
nicotinamide mononucleotide transporter PnuC
L3_072_000M1_scaffold_178_9
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(17943..18761)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3K625_TRESO
Uncharacterized protein {ECO:0000313|EMBL:EPF27492.1}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
phospholipid/glycerol acyltransferase
L3_072_000M1_scaffold_178_10
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19040..19843
DNA (804bp) protein (268aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G4A5_9PROT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDE21771.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
short-chain dehydrogenase/reductase SDR
L3_072_000M1_scaffold_178_11
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(19908..21071)
DNA (1164bp) protein (388aa)
Putative glycosyltransferase n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HHJ8_9FIRM
Putative glycosyltransferase {ECO:0000313|EMBL:CDB25467.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
glycosyltransferase
L3_072_000M1_scaffold_178_12
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21170..22543)
DNA (1374bp) protein (458aa)
Integral membrane protein n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K7D3_9FIRM
Integral membrane protein {ECO:0000313|EMBL:CDE72214.1}; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
L3_072_000M1_scaffold_178_13
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(22631..23896)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GK18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25848.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_178_14
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists

comp(24147..25310)
DNA (1164bp) protein (388aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase (Penicilin binding protein) n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BTK9_9FIRM
D-alanyl-D-alanine carboxypeptidase (Penicilin binding protein) {ECO:0000313|EMBL:CDD68423.1}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
L3_072_000M1_scaffold_178_15
unknown

Not on your lists

comp(25404..27338)
DNA (1935bp) protein (645aa)

This feature has no annotations

L3_072_000M1_scaffold_178_16
unknown

Not on your lists

comp(27346..28017)
DNA (672bp) protein (224aa)

This feature has no annotations

L3_072_000M1_scaffold_178_17
unknown

Not on your lists

comp(28049..28801)
DNA (753bp) protein (251aa)
sporulation transcription factor Spo0A
L3_072_000M1_scaffold_178_18
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists


comp(29079..29420)
DNA (342bp) protein (114aa)
50S ribosomal protein L19 n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GMK5_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
ribosomal protein L19
L3_072_000M1_scaffold_178_19
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(29655..30020)
DNA (366bp) protein (122aa)
UPF0102 protein BN704_00511 n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GVE9_9FIRM
UPF0102 protein BN704_00511 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_178_20
Clostridium sp. CAG:245, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30024..30539)
DNA (516bp) protein (172aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:245.;"
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:245 RepID=R6BIM2_9CLOT
L3_072_000M1_scaffold_178_21
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(30487..31515)
DNA (1029bp) protein (343aa)
Ribosome biogenesis GTPase A n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GWN0_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
ribosome biogenesis GTP-binding protein YlqF
L3_072_000M1_scaffold_178_22
Clostridium sp. CAG:710, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31517..32491)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:710 RepID=R5T5W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ58519.1}; TaxID=1262833 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:710.;"
hypothetical protein
L3_072_000M1_scaffold_178_23
Clostridium sp. CAG:793, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32478..33155)
DNA (678bp) protein (226aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262840 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:793.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.221)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:793 RepID=R5N8Z0_9CLOT
L3_072_000M1_scaffold_178_24
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33146..33625)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimM n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7KAQ7_9FIRM
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L3_072_000M1_scaffold_178_25
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33644..33883)
DNA (240bp) protein (80aa)
UPF0109 protein TherJR_2049 n=1 Tax=Thermincola potens (strain JR) RepID=D5X8L8_THEPJ
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_072_000M1_scaffold_178_26
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33902..34198)
DNA (297bp) protein (99aa)
30S ribosomal protein S16 n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K8U1_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
rpsP; 30S ribosomal protein S16
L3_072_000M1_scaffold_178_27
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists


comp(34281..35603)
DNA (1323bp) protein (441aa)
Signal recognition particle protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GWN6_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
signal recognition particle protein
L3_072_000M1_scaffold_178_28
Jeotgalicoccus sp. 13MG44_air, Jeotgalicoccus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35616..35939)
DNA (324bp) protein (108aa)
UPF0122 protein HMPREF9429_01589 n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2ZDT3_9FIRM
UPF0122 protein BN1048_00509 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1461582 species="Bacteria; Firmicutes; Bacilli; Bacillales; Jeotgalicoccus.;" source="Jeotgalicoccus sp. 13MG44_air.;"
putative helix-turn-helix protein YlxM/p13 family protein
L3_072_000M1_scaffold_178_29
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36027..36914)
DNA (888bp) protein (296aa)
Signal recognition particle receptor FtsY n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FGR9_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
signal recognition particle-docking protein FtsY
L3_072_000M1_scaffold_178_30
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

comp(36931..37956)
DNA (1026bp) protein (342aa)
Chromosome partition protein Smc n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GJP8_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
smc; chromosome partition protein Smc
Displaying items 1-30 of 104 in total

View Taxonomy