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L3_072_000M1_scaffold_196

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_196_1
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..2402
DNA (2400bp) protein (800aa)
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X706_9FIRM
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:CDD02212.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
serine/threonine protein kinase with PASTA sensor(s)
L3_072_000M1_scaffold_196_2
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2416..3309
DNA (894bp) protein (298aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WDG3_9FIRM
L3_072_000M1_scaffold_196_3
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3306..3944
DNA (639bp) protein (213aa)
Phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYH1_9FIRM
Phosphatidylserine synthase {ECO:0000313|EMBL:CDD02210.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_4
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4074..4619
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W626_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02209.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
putative RNA polymerase sigma factor (ECF subfamily)
L3_072_000M1_scaffold_196_5
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4616..5251
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VU29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02208.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_6
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5267..5953
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X6Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02207.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_7
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5959..7080
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02205.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_196_8
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7094..8497
DNA (1404bp) protein (468aa)
Membrane bound O-acyl transferase MBOAT family protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VU27_9FIRM
Membrane bound O-acyl transferase MBOAT family protein {ECO:0000313|EMBL:CDD02203.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
membrane bound O-acyl transferase MBOAT family protein
L3_072_000M1_scaffold_196_9
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8606..9304
DNA (699bp) protein (233aa)
PHP domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X6Z5_9FIRM
PHP domain protein {ECO:0000313|EMBL:CDD02202.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
PHP domain-containing protein
L3_072_000M1_scaffold_196_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9495..10853
DNA (1359bp) protein (453aa)
Citrate synthase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WDF3_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
citrate synthase
L3_072_000M1_scaffold_196_11
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10879..11277
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02200.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
glutamyl-tRNA(Gln) amidotransferase subunit C
L3_072_000M1_scaffold_196_12
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11852..13249
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WDE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02196.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_196_13
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13233..14564
DNA (1332bp) protein (444aa)
Putative pyridoxal phosphate-dependent transferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYF9_9FIRM
Putative pyridoxal phosphate-dependent transferase {ECO:0000313|EMBL:CDD02195.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
putative pyridoxal phosphate-dependent transferase
L3_072_000M1_scaffold_196_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14776..15876
DNA (1101bp) protein (367aa)
Protein RecA n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W612_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
recA protein
L3_072_000M1_scaffold_196_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15876..16505
DNA (630bp) protein (210aa)
Regulatory protein RecX n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VU19_9FIRM
Regulatory protein RecX {ECO:0000313|EMBL:CDD02193.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
recX; recombination regulator RecX
L3_072_000M1_scaffold_196_16
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16477..17829
DNA (1353bp) protein (451aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
rimO; Ribosomal protein S12 methylthiotransferase RimO (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X6Y3_9FIRM
L3_072_000M1_scaffold_196_17
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17848..18465
DNA (618bp) protein (206aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WDE3_9FIRM
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDD02191.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18478..19890
DNA (1413bp) protein (471aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VYF6_9FIRM
L3_072_000M1_scaffold_196_19
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19875..20270
DNA (396bp) protein (132aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Mini-ribonuclease 3 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W608_9FIRM
ribonuclease III
L3_072_000M1_scaffold_196_20
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20284..20895
DNA (612bp) protein (204aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
LexA repressor n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VU17_9FIRM
LexA family transcriptional repressor
L3_072_000M1_scaffold_196_21
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21949..22515)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD04634.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_22
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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22719..24671
DNA (1953bp) protein (651aa)
UvrABC system protein B id=4057852 bin=GWF2_Clostridiales_36_10 species=Ruminococcus bromii genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
uvrB; UvrABC system protein B
Tax=GWF2_Clostridiales_36_10_curated
L3_072_000M1_scaffold_196_23
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24685..27492
DNA (2808bp) protein (936aa)
UvrABC system protein A n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCS0_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Excinuclease ABC subunit A
L3_072_000M1_scaffold_196_24
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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27505..29343
DNA (1839bp) protein (613aa)
Radical SAM domain protein id=4057849 bin=GWF2_Clostridiales_36_10 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Fe-S oxidoreductase
Tax=GWF2_Clostridiales_36_10_curated
L3_072_000M1_scaffold_196_25
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29331..29960
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W569_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD04610.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_196_26
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30083..31237
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W566_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD04605.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_196_27
unknown

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comp(31184..31339)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_072_000M1_scaffold_196_28
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31532..32233
DNA (702bp) protein (234aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
pyrH; uridylate kinase PyrH (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCQ8_9FIRM
L3_072_000M1_scaffold_196_29
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32261..32815
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0M6_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ribosome recycling factor
L3_072_000M1_scaffold_196_30
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32812..33501
DNA (690bp) protein (230aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
uppS; Isoprenyl transferase (EC:2.5.1.-)
Isoprenyl transferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6XE38_9FIRM
Displaying items 1-30 of 75 in total

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