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L3_072_000M1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 172 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_216_1
unknown

Not on your lists

comp(170..904)
DNA (735bp) protein (245aa)

This feature has no annotations

L3_072_000M1_scaffold_216_2
Lysinibacillus massiliensis, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1036..2838
DNA (1803bp) protein (601aa)
GTP pyrophosphokinase n=1 Tax=Ureibacillus thermosphaericus RepID=UPI0002F63E32
(P)ppGpp synthetase {ECO:0000313|EMBL:KGR88212.1}; TaxID=1211035 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529.;"
guanosine polyphosphate pyrophosphohydrolase/synthetase
L3_072_000M1_scaffold_216_3
Mycoplasma sp. CAG:776, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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comp(2822..4123)
DNA (1302bp) protein (434aa)
Glycosyltransferase group 2 family protein n=1 Tax=Mycoplasma sp. CAG:776 RepID=R7ND42_9MOLU
Glycosyltransferase group 2 family protein {ECO:0000313|EMBL:CDF10675.1}; TaxID=1262906 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:776.;"
hypothetical protein
L3_072_000M1_scaffold_216_4
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

4237..4620
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U0Z1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73796.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Bacterial membrane flanked domain.
L3_072_000M1_scaffold_216_5
Acidaminococcus sp. CAG:917, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(4652..6592)
DNA (1941bp) protein (647aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1262688 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus sp. CAG:917.;"
Phosphoglucosamine mutase n=1 Tax=Acidaminococcus sp. CAG:917 RepID=R7K9Y6_9FIRM
phosphoglucosamine mutase
L3_072_000M1_scaffold_216_6
unknown

Not on your lists

6673..6855
DNA (183bp) protein (61aa)

This feature has no annotations

L3_072_000M1_scaffold_216_7
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(6852..7109)
DNA (258bp) protein (86aa)
Uncharacterized protein id=2987311 bin=GWF2_Clostridiales_38_85 species=Eubacterium siraeum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
membrane protein
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_216_8
Thermoanaerobacterium aotearoense, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

7317..7784
DNA (468bp) protein (156aa)
Transcription elongation factor GreA n=1 Tax=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) RepID=I3VTX6_THESW
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1421016 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium aotearoense SCUT27.;"
L3_072_000M1_scaffold_216_9
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7880..8857
DNA (978bp) protein (326aa)
DNA polymerase III delta prime subunit n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5V5_9FIRM
DNA polymerase III delta prime subunit {ECO:0000313|EMBL:CDE71218.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
DNA polymerase III, delta'' subunit
L3_072_000M1_scaffold_216_10
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8842..9717
DNA (876bp) protein (292aa)
Putative PSP1-like protein n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K4R4_9FIRM
Putative PSP1-like protein {ECO:0000313|EMBL:CDE71219.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
hypothetical protein
L3_072_000M1_scaffold_216_11
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9717..10445
DNA (729bp) protein (243aa)
COG4123: Predicted O-methyltransferase n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FW91_9FIRM
COG4123: Predicted O-methyltransferase {ECO:0000313|EMBL:CCY04461.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
type 11 methyltransferase
L3_072_000M1_scaffold_216_12
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10454..11269
DNA (816bp) protein (272aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G7H5_9PROT
Ribosomal RNA small subunit methyltransferase I
L3_072_000M1_scaffold_216_13
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11316..11960
DNA (645bp) protein (215aa)
dTMP kinase (EC:2.7.4.9)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
Thymidylate kinase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEF9_ALKOO
L3_072_000M1_scaffold_216_14
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12121..19095
DNA (6975bp) protein (2325aa)
Ig-like domain-containing surface protein n=1 Tax=Prevotella sp. CAG:873 RepID=R7IZE2_9BACT
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CDE57024.1}; TaxID=1262936 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
Ig-like domain-containing surface protein
L3_072_000M1_scaffold_216_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19517..19825
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=19 Tax=Clostridium RepID=RS10_CLOB1
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000313|EMBL:KIN82356.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_072_000M1_scaffold_216_16
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19849..20478
DNA (630bp) protein (210aa)
50S ribosomal protein L3 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G6P1_9PROT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
rplC; 50S ribosomal protein L3
L3_072_000M1_scaffold_216_17
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20493..21119
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Clostridium sp. CAG:349 RepID=R6WQF5_9CLOT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
rplD; 50S ribosomal protein L4
L3_072_000M1_scaffold_216_18
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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21116..21418
DNA (303bp) protein (101aa)
50S ribosomal protein L23 n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5WPD9_9DELT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
50S ribosomal protein L25
L3_072_000M1_scaffold_216_19
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21434..22261
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FJ22_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
50S ribosomal protein L2
L3_072_000M1_scaffold_216_20
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists


22272..22565
DNA (294bp) protein (98aa)
30S ribosomal protein S19 n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GH67_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
SSU ribosomal protein S19P
L3_072_000M1_scaffold_216_21
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22578..22964
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K829_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
50S ribosomal protein L22
L3_072_000M1_scaffold_216_22
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists


22978..23661
DNA (684bp) protein (228aa)
30S ribosomal protein S3 n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BSA8_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
30S ribosomal protein S3
L3_072_000M1_scaffold_216_23
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23648..24088
DNA (441bp) protein (147aa)
50S ribosomal protein L16 n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9J2T8_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
50S ribosomal protein L16
L3_072_000M1_scaffold_216_24
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24078..24284
DNA (207bp) protein (69aa)
50S ribosomal protein L29 n=1 Tax=Clostridium sp. CAG:508 RepID=R6RBN2_9CLOT
ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
L3_072_000M1_scaffold_216_25
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists


24295..24555
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BRE1_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
rpsQ; ribosomal protein S17
L3_072_000M1_scaffold_216_26
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24574..24942
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Clostridium sp. CAG:349 RepID=R6WID3_9CLOT
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
50S ribosomal protein L14
L3_072_000M1_scaffold_216_27
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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24954..25418
DNA (465bp) protein (155aa)
50S ribosomal protein L24 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXE0_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
rplX; 50S ribosomal protein L24
L3_072_000M1_scaffold_216_28
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

Not on your lists


25431..25973
DNA (543bp) protein (181aa)
50S ribosomal protein L5 n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BRC5_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
rplE; 50S ribosomal protein L5
L3_072_000M1_scaffold_216_29
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25985..26170
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Clostridium sp. CAG:590 RepID=R5ELL1_9CLOT
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
rpsN; 30S ribosomal protein S14
L3_072_000M1_scaffold_216_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26184..26582
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3M5_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rpsH; 30S ribosomal protein S8
Displaying items 1-30 of 172 in total

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