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L3_072_000M1_scaffold_222

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_222_1
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..109)
DNA (108bp) protein (36aa)
Hpt domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X5W2_9FIRM
Hpt domain protein {ECO:0000313|EMBL:CDD01857.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_222_2
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(410..619)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FRI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE17929.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L3_072_000M1_scaffold_222_3
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(760..1116)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01856.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
small acid-soluble spore protein alpha/beta type
L3_072_000M1_scaffold_222_4
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1132..2043
DNA (912bp) protein (304aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Quinolinate synthetase A n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VXH9_9FIRM
quinolinate synthetase A
L3_072_000M1_scaffold_222_5
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2036..3064
DNA (1029bp) protein (343aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W546_9FIRM
L3_072_000M1_scaffold_222_6
unknown

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3094..3246
DNA (153bp) protein (51aa)

This feature has no annotations

L3_072_000M1_scaffold_222_7
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3276..4646
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VT48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01853.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_222_8
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4760..5467
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X5V8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01852.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
VTC domain.
L3_072_000M1_scaffold_222_9
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5480..6148
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01851.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
cell dividion protein FtsZ
L3_072_000M1_scaffold_222_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6374..6850)
DNA (477bp) protein (159aa)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VXH5_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CDD01850.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ADP-ribose pyrophosphatase
L3_072_000M1_scaffold_222_11
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7293..7703
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25266.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_072_000M1_scaffold_222_12
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8337..8729)
DNA (393bp) protein (131aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VT47_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDD01848.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
iscU; FeS cluster assembly scaffold IscU
L3_072_000M1_scaffold_222_13
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8732..9943)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X5V3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01847.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_222_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10168..10623
DNA (456bp) protein (152aa)
Ribosome maturation factor RimP n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCD7_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_222_15
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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10642..11781
DNA (1140bp) protein (380aa)
Transcription termination factor NusA id=3761114 bin=GWF2_Clostridiales_36_10 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
transcription termination factor NusA
Tax=GWF2_Clostridiales_36_10_curated
L3_072_000M1_scaffold_222_16
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11796..12083
DNA (288bp) protein (96aa)
Putative nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W530_9FIRM
Putative nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CDD01839.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
putative nucleic-acid-binding protein implicated in transcription termination
L3_072_000M1_scaffold_222_17
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12076..12387
DNA (312bp) protein (104aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VT39_9FIRM
Ribosomal protein L7Ae/L30e/S12e/Gadd45 {ECO:0000313|EMBL:CDD01838.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
50S ribosomal protein L7ae
L3_072_000M1_scaffold_222_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12393..14759
DNA (2367bp) protein (789aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCC7_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
bacterial translation initiation factor 2 (bIF-2)
L3_072_000M1_scaffold_222_19
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14761..15099
DNA (339bp) protein (113aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W526_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_222_20
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15109..16074
DNA (966bp) protein (322aa)
Exopolyphosphatase-like enzyme n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VT36_9FIRM
Exopolyphosphatase-like enzyme {ECO:0000313|EMBL:CDD01833.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
conserved hypothetical protein
L3_072_000M1_scaffold_222_21
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16043..16978
DNA (936bp) protein (312aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCC2_9FIRM
L3_072_000M1_scaffold_222_22
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

17051..17923
DNA (873bp) protein (291aa)
ParB family protein id=3761107 bin=GWF2_Clostridiales_36_10 species=Ruminococcus flavefaciens genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
ParB family protein
Tax=GWF2_Clostridiales_36_10_curated
L3_072_000M1_scaffold_222_23
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17929..19098)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01816.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
sodium/hydrogen exchanger
L3_072_000M1_scaffold_222_24
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19120..19482)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VXE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01815.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_222_25
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19513..20604)
DNA (1092bp) protein (364aa)
Oxidoreductase domain-containing protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W504_9FIRM
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:CDD01814.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
dehydrogenase-like protein
L3_072_000M1_scaffold_222_26
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20781..21857
DNA (1077bp) protein (359aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VT20_9FIRM
L3_072_000M1_scaffold_222_27
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21844..23004
DNA (1161bp) protein (387aa)
4-phosphoerythronate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WCA7_9FIRM
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CDD01811.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
L3_072_000M1_scaffold_222_28
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23082..23309
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W500_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD01809.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_222_29
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23679..24227
DNA (549bp) protein (183aa)
TIGR00730 family protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X5R2_9FIRM
TIGR00730 family protein {ECO:0000313|EMBL:CDD01807.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
conserved hypothetical protein, DprA/Smf-related, family 2
L3_072_000M1_scaffold_222_30
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24289..24849
DNA (561bp) protein (187aa)
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VXD8_9FIRM
Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family {ECO:0000313|EMBL:CDD01805.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
Displaying items 1-30 of 91 in total

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