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L3_072_000M1_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_224_1
Bacteroides fluxus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2..1810)
DNA (1809bp) protein (603aa)
TonB family domain protein n=1 Tax=Bacteroides fluxus YIT 12057 RepID=F3PNR8_9BACE
TonB family domain protein {ECO:0000313|EMBL:EGF59594.1}; TaxID=763034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fluxus YIT 12057.;"
hypothetical protein
L3_072_000M1_scaffold_224_2
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2070..2435)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bacteroides finegoldii CL09T03C10 RepID=K5DBR4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKJ90398.1}; TaxID=997888 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii CL09T03C10.;"
hypothetical protein
L3_072_000M1_scaffold_224_3
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2580..3143)
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=F3PNR9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKN31104.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
hypothetical protein
L3_072_000M1_scaffold_224_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3091..3621)
DNA (531bp) protein (177aa)
Site-specific recombinase, phage integrase family n=2 Tax=Parabacteroides merdae RepID=A7A9J6_9PORP
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDN88303.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Site-specific recombinase XerD
L3_072_000M1_scaffold_224_5
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4037..5197
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y294_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12547.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_224_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5233..5391
DNA (159bp) protein (53aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7A9J2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12548.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_072_000M1_scaffold_224_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5518..8913
DNA (3396bp) protein (1132aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X092_9PORP
two-component system sensor histidine kinase
L3_072_000M1_scaffold_224_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8941..10152
DNA (1212bp) protein (404aa)
L-fucose:H+ symporter permease n=3 Tax=Parabacteroides RepID=A7ACH6_9PORP
L-fucose:H+ symporter permease {ECO:0000313|EMBL:EDN87516.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
fucose permease
L3_072_000M1_scaffold_224_9
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10226..11107)
DNA (882bp) protein (294aa)
Kinase, PfkB family n=5 Tax=Parabacteroides RepID=A7ACH5_9PORP
Kinase, PfkB family {ECO:0000313|EMBL:EEC98247.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
ribokinase
L3_072_000M1_scaffold_224_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11700..12269
DNA (570bp) protein (190aa)
RNA polymerase sigma-70 factor n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ACH4_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN87514.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase sigma-70 factor
L3_072_000M1_scaffold_224_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12338..13321
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WN05_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD12553.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_224_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13469..16903
DNA (3435bp) protein (1145aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides merdae RepID=A7AJ35_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN85402.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
collagen-binding protein
L3_072_000M1_scaffold_224_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16914..18764
DNA (1851bp) protein (617aa)
SusD family protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AJ34_9PORP
SusD family protein {ECO:0000313|EMBL:EDN85401.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
starch-binding protein
L3_072_000M1_scaffold_224_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18798..20060
DNA (1263bp) protein (421aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AJ33_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN85400.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_224_15
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20216..20368)
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=B7B5K9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEC98239.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
L3_072_000M1_scaffold_224_16
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20823..22109)
DNA (1287bp) protein (429aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=2 Tax=Parabacteroides RepID=B7B5K8_9PORP
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
L3_072_000M1_scaffold_224_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22206..23066
DNA (861bp) protein (287aa)
Dihydropteroate synthase n=3 Tax=Parabacteroides merdae RepID=A7AJ28_9PORP
Dihydropteroate synthase {ECO:0000313|EMBL:EKN13986.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
dihydropteroate synthase
L3_072_000M1_scaffold_224_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23071..23856
DNA (786bp) protein (262aa)
TIGR00159 family protein n=3 Tax=Parabacteroides RepID=A7AJ27_9PORP
TIGR00159 family protein {ECO:0000313|EMBL:EDN85394.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_224_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23989..25002
DNA (1014bp) protein (338aa)
Phosphate acetyltransferase n=5 Tax=Parabacteroides RepID=A7AJ26_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14389.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphotransacetylase/phosphate acetyltransferase
L3_072_000M1_scaffold_224_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25088..26287
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Acetate kinase n=4 Tax=Parabacteroides RepID=A7AJ25_9PORP
acetate kinase
L3_072_000M1_scaffold_224_21
unknown

Not on your lists

26553..26783
DNA (231bp) protein (77aa)

This feature has no annotations

L3_072_000M1_scaffold_224_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26880..27656)
DNA (777bp) protein (259aa)
Ser/Thr phosphatase family protein n=2 Tax=Parabacteroides merdae RepID=A7AJ23_9PORP
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EDN85390.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
UDP-2,3-diacylglucosamine hydrolase
L3_072_000M1_scaffold_224_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27661..27978)
DNA (318bp) protein (106aa)
FeS assembly SUF system protein n=3 Tax=Parabacteroides RepID=K6A6H4_9PORP
Putative FeS assembly SUF system protein {ECO:0000313|EMBL:EDN85389.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_224_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28133..28813)
DNA (681bp) protein (227aa)
DNA repair protein RadC n=3 Tax=Parabacteroides RepID=A7AJ21_9PORP
DNA repair protein RadC {ECO:0000313|EMBL:CDD14384.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA repair protein
L3_072_000M1_scaffold_224_25
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28899..29462)
DNA (564bp) protein (188aa)
Elongation factor P n=7 Tax=Parabacteroides RepID=A7AJ20_9PORP
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
elongation factor P
L3_072_000M1_scaffold_224_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29653..30351)
DNA (699bp) protein (233aa)
TIGR00659 family protein n=3 Tax=Parabacteroides merdae RepID=K6AE31_9PORP
Putative TIGR00659 family protein {ECO:0000313|EMBL:EDN85386.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_224_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30344..30694)
DNA (351bp) protein (117aa)
LrgA family protein n=3 Tax=Parabacteroides RepID=A7AJ18_9PORP
LrgA family protein {ECO:0000313|EMBL:EDN85385.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_224_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31243..31551)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6A6G9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12713.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_072_000M1_scaffold_224_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31623..32165
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5ZR25_9PORP
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EKN13976.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L3_072_000M1_scaffold_224_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32321..33502
DNA (1182bp) protein (394aa)
Sigma factor regulatory protein, FecR/PupR family n=2 Tax=Parabacteroides merdae RepID=A7AJ14_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN85381.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-FecI sigma factor, FecR
Displaying items 1-30 of 60 in total

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