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L3_072_000M1_scaffold_366

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_366_1
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..186
DNA (186bp) protein (62aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Homoserine dehydrogenase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WF73_9FIRM
L3_072_000M1_scaffold_366_2
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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183..1073
DNA (891bp) protein (297aa)
Putative permease, DMT superfamily n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MS66_9CLOT
putative permease, DMT superfamily
Putative permease, DMT superfamily {ECO:0000313|EMBL:AGF57581.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_072_000M1_scaffold_366_3
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1070..3919
DNA (2850bp) protein (950aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
Beta galactosidase small chain n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7S7_9FIRM
glycoside hydrolase
L3_072_000M1_scaffold_366_4
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3957..6329
DNA (2373bp) protein (791aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X8V4_9FIRM
Putative lipoprotein {ECO:0000313|EMBL:CDD02822.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_5
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6445..6912
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WF68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02821.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_6
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7430..7741)
DNA (312bp) protein (104aa)
30S ribosomal protein S20 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7S3_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
rpsT; 30S ribosomal protein S20
L3_072_000M1_scaffold_366_7
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

7838..8725
DNA (888bp) protein (296aa)
spore protease (EC:3.4.24.78)
GPR endopeptidase id=3473857 bin=GWF2_Clostridiales_38_85 species=Clostridium sp. Maddingley MBC34-26 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
L3_072_000M1_scaffold_366_8
unknown

Not on your lists

comp(8688..8906)
DNA (219bp) protein (73aa)

This feature has no annotations

L3_072_000M1_scaffold_366_9
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8910..10403
DNA (1494bp) protein (498aa)
S-layer homology domain protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0A5_9FIRM
S-layer homology domain protein {ECO:0000313|EMBL:CDD02815.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_10
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10482..11318)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7R8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02814.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_11
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11709..12248)
DNA (540bp) protein (180aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X8U4_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD02812.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_12
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12250..12597)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WF58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02811.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_13
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12606..14477)
DNA (1872bp) protein (624aa)
Morn repeat protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0A0_9FIRM
Morn repeat protein {ECO:0000313|EMBL:CDD02810.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_14
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14592..15257)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7U7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02849.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15307..16254)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0D9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02850.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
putative oxidoreductase
L3_072_000M1_scaffold_366_16
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16303..17568)
DNA (1266bp) protein (422aa)
L-alanine-DL-glutamate epimerase-like protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WF97_9FIRM
L-alanine-DL-glutamate epimerase-like protein {ECO:0000313|EMBL:CDD02851.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L-alanine-DL-glutamate epimerase-like protein
L3_072_000M1_scaffold_366_17
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17569..18039)
DNA (471bp) protein (157aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X8Y9_9FIRM
L3_072_000M1_scaffold_366_18
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18127..18672)
DNA (546bp) protein (182aa)
RNA methyltransferase RsmD family n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VVU8_9FIRM
RNA methyltransferase RsmD family {ECO:0000313|EMBL:CDD02853.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_366_19
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(18669..20477)
DNA (1809bp) protein (603aa)
UvrABC system protein C id=4332000 bin=GWF2_Clostridiales_36_10 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
Excinuclease ABC subunit C
Tax=GWF2_Clostridiales_36_10_curated
L3_072_000M1_scaffold_366_20
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20545..20847)
DNA (303bp) protein (101aa)
Phosphotransferase system phosphocarrier protein HPr n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VVV4_9FIRM
Phosphotransferase system phosphocarrier protein HPr {ECO:0000313|EMBL:CDD02858.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
phosphotransferase system, phosphocarrier protein HPr
L3_072_000M1_scaffold_366_21
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20945..21418)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7V7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02859.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_22
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21415..21810)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0F0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02860.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_23
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21812..23578)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD02861.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
L3_072_000M1_scaffold_366_24
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23571..24275)
DNA (705bp) protein (235aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VVX3_9FIRM
tRNA (guanine-N1)-methyltransferase
L3_072_000M1_scaffold_366_25
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24272..24766)
DNA (495bp) protein (165aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7X0_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
rimM; Ribosome maturation factor RimM
L3_072_000M1_scaffold_366_26
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24774..25004)
DNA (231bp) protein (77aa)
UPF0109 protein BN636_01324 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W0H0_9FIRM
UPF0109 protein BN636_01324 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
RNA-binding protein (KH domain)
L3_072_000M1_scaffold_366_27
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25019..25237)
DNA (219bp) protein (73aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WFB8_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
rpsP; ribosomal protein S16
L3_072_000M1_scaffold_366_28
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25336..26634)
DNA (1299bp) protein (433aa)
Signal recognition particle protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6X918_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
ffh; Signal recognition particle protein
L3_072_000M1_scaffold_366_29
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26665..27117)
DNA (453bp) protein (151aa)
UPF0122 protein BN636_01327 n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6VVX9_9FIRM
UPF0122 protein BN636_01327 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
helix-turn-helix protein YlxM/p13 family protein
L3_072_000M1_scaffold_366_30
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27226..28137)
DNA (912bp) protein (304aa)
DNA-binding protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W7X4_9FIRM
DNA-binding protein {ECO:0000313|EMBL:CDD02879.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
transcriptional regulator, DNA-binding protein
Displaying items 1-30 of 57 in total

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