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L3_072_000M1_scaffold_380

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_380_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..146)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DEK4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13476.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_072_000M1_scaffold_380_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(183..1085)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ADW5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87257.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L3_072_000M1_scaffold_380_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1123..2334)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADW6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87258.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_072_000M1_scaffold_380_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2578..3846)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADW7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87259.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
fimbrilin
L3_072_000M1_scaffold_380_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4259..6313)
DNA (2055bp) protein (685aa)
Response regulator receiver domain protein n=2 Tax=Parabacteroides merdae RepID=A7ADW8_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:EDN87260.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system sensor histidine kinase/response regulator
L3_072_000M1_scaffold_380_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7368..8291
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADW9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87261.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L3_072_000M1_scaffold_380_7
unknown

Not on your lists

comp(8808..8918)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_072_000M1_scaffold_380_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9045..9428
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ADX0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87262.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_380_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9530..11467
DNA (1938bp) protein (646aa)
Permease YjgP/YjgQ family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X2Y4_9PORP
Permease YjgP/YjgQ family {ECO:0000313|EMBL:CDD13469.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_380_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11494..12711
DNA (1218bp) protein (406aa)
Riboflavin biosynthesis protein RibBA n=3 Tax=Parabacteroides RepID=A7ADX2_9PORP
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
L3_072_000M1_scaffold_380_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12737..13930
DNA (1194bp) protein (398aa)
Aminotransferase class I/II n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y4Z7_9PORP
Aminotransferase class I/II {ECO:0000313|EMBL:CDD13467.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
aspartate aminotransferase
L3_072_000M1_scaffold_380_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14040..15029)
DNA (990bp) protein (330aa)
Elongation factor Ts n=4 Tax=Parabacteroides RepID=A7ADX4_9PORP
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tsf; elongation factor Ts
L3_072_000M1_scaffold_380_13
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(15200..16042)
DNA (843bp) protein (281aa)
30S ribosomal protein S2 n=5 Tax=Parabacteroides RepID=A7ADX5_9PORP
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
rpsB; 30S ribosomal protein S2
L3_072_000M1_scaffold_380_14
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(16184..16570)
DNA (387bp) protein (129aa)
30S ribosomal protein S9 n=6 Tax=Parabacteroides RepID=A7ADX6_9PORP
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
rpsI; 30S ribosomal protein S9
L3_072_000M1_scaffold_380_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(16576..17031)
DNA (456bp) protein (152aa)
50S ribosomal protein L13 n=6 Tax=Parabacteroides RepID=A7ADX7_9PORP
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
rplM; 50S ribosomal protein L13
L3_072_000M1_scaffold_380_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17363..17992)
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=K5ZCX0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87270.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_380_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18120..21920
DNA (3801bp) protein (1267aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA polymerase III, alpha subunit n=2 Tax=Parabacteroides merdae RepID=A7ADX9_9PORP
DNA polymerase III subunit alpha
L3_072_000M1_scaffold_380_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21989..22303
DNA (315bp) protein (105aa)
Thioredoxin n=6 Tax=Parabacteroides RepID=A7ADY0_9PORP
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
thioredoxin
L3_072_000M1_scaffold_380_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22298..22978)
DNA (681bp) protein (227aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADY1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87273.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_380_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23059..25449
DNA (2391bp) protein (797aa)
TonB-dependent receptor n=2 Tax=Parabacteroides RepID=A7ADY2_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:EDN87274.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB dependent outer membrane protein
L3_072_000M1_scaffold_380_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25549..27933
DNA (2385bp) protein (795aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Parabacteroides merdae RepID=A7ADY3_9PORP
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EDN87275.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
integral membrane sensor signal transduction histidine kinase
L3_072_000M1_scaffold_380_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27899..28900)
DNA (1002bp) protein (334aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WJ79_9PORP
two-component system sensor histidine kinase
L3_072_000M1_scaffold_380_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28897..30261)
DNA (1365bp) protein (455aa)
Sigma-54 interaction domain protein n=2 Tax=Parabacteroides merdae RepID=A7ADY5_9PORP
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EDN87277.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system response regulator
L3_072_000M1_scaffold_380_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

31007..32476
DNA (1470bp) protein (490aa)
Outer membrane efflux protein n=3 Tax=Parabacteroides merdae RepID=A7ADY7_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN87279.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
membrane protein
L3_072_000M1_scaffold_380_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32510..33760
DNA (1251bp) protein (417aa)
Efflux transporter RND family MFP subunit n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y0H6_9PORP
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD11982.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_380_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33771..36176
DNA (2406bp) protein (802aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WLH2_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11983.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
efflux ABC transporter permease
L3_072_000M1_scaffold_380_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36199..38523
DNA (2325bp) protein (775aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7ADZ0_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87282.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative ABc transport system, membrane protein
L3_072_000M1_scaffold_380_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38564..40954
DNA (2391bp) protein (797aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K6A041_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN09043.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_072_000M1_scaffold_380_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

40993..43356
DNA (2364bp) protein (788aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6U4_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11986.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
multidrug ABC transporter substrate-binding protein
L3_072_000M1_scaffold_380_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

43531..44583
DNA (1053bp) protein (351aa)
Antioxidant, AhpC/TSA family n=3 Tax=Parabacteroides RepID=A7ADZ3_9PORP
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EDN87285.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative thiol:disulfide oxidoreductase
Displaying items 1-30 of 39 in total

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