ggKbase home page

L3_072_000M1_scaffold_535

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_535_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(175..627)
DNA (453bp) protein (151aa)
YhcH/YjgK/YiaL family protein n=4 Tax=Parabacteroides RepID=A7AEP6_9PORP
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:EDN86522.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_535_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

815..3025
DNA (2211bp) protein (737aa)
Copper-exporting ATPase n=3 Tax=Parabacteroides RepID=A7AEP5_9PORP
Copper-exporting ATPase {ECO:0000313|EMBL:EDN86521.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
cation-transporting ATPase
L3_072_000M1_scaffold_535_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3105..3311
DNA (207bp) protein (69aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AEP4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14074.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cation transport ATPase
L3_072_000M1_scaffold_535_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3316..3969
DNA (654bp) protein (218aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AEP3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86519.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hemolysin III
L3_072_000M1_scaffold_535_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4220..5134
DNA (915bp) protein (305aa)
DNA/RNA non-specific endonuclease n=2 Tax=Parabacteroides merdae RepID=A7AEP2_9PORP
DNA/RNA non-specific endonuclease {ECO:0000313|EMBL:EDN86518.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
endonuclease
L3_072_000M1_scaffold_535_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5283..6332
DNA (1050bp) protein (350aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Parabacteroides RepID=K6C4D1_9PORP
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD14076.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
periplasmic linker protein multidrug resistance protein
L3_072_000M1_scaffold_535_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6344..9385
DNA (3042bp) protein (1014aa)
RND transporter, HAE1/HME family, permease protein n=2 Tax=Parabacteroides merdae RepID=A7AEP0_9PORP
RND transporter, HAE1/HME family, permease protein {ECO:0000313|EMBL:EDN86516.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
AcrB/AcrD/AcrF family transporter
L3_072_000M1_scaffold_535_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9418..10683
DNA (1266bp) protein (422aa)
Outer membrane efflux protein n=2 Tax=Parabacteroides merdae RepID=A7AEN9_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN86515.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane efflux protein
L3_072_000M1_scaffold_535_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10854..11360)
DNA (507bp) protein (169aa)
Flavodoxin n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y1Z6_9PORP
Flavodoxin {ECO:0000256|PIRNR:PIRNR038996}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
flavodoxin FldA
L3_072_000M1_scaffold_535_10
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11522..13558)
DNA (2037bp) protein (679aa)
Transketolase, C-terminal domain protein n=2 Tax=Parabacteroides RepID=A7AEN7_9PORP
Transketolase C-terminal domain protein {ECO:0000313|EMBL:CDD12480.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
2-oxoisovalerate dehydrogenase
L3_072_000M1_scaffold_535_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14101..15462)
DNA (1362bp) protein (454aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes (EC:2.3.1.61)
2-oxo acid dehydrogenase acyltransferase (Catalytic domain) n=2 Tax=Parabacteroides RepID=A7AEN5_9PORP
2-oxo acid dehydrogenase acyltransferase (Catalytic domain) {ECO:0000313|EMBL:EDN86511.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_072_000M1_scaffold_535_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15479..16219)
DNA (741bp) protein (247aa)
Lipoyltransferase and lipoate-protein ligase n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B524_9PORP
Lipoyltransferase and lipoate-protein ligase {ECO:0000313|EMBL:EKN15944.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
lipoate-protein ligase A
L3_072_000M1_scaffold_535_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16222..17571)
DNA (1350bp) protein (450aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y6K2_9PORP
dihydrolipoamide dehydrogenase
L3_072_000M1_scaffold_535_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17584..18186)
DNA (603bp) protein (201aa)
Nitroreductase family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRU8_9PORP
Nitroreductase family protein {ECO:0000313|EMBL:CDD14023.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
nitroreductase
L3_072_000M1_scaffold_535_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18355..19617
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6A833_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN15947.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
L3_072_000M1_scaffold_535_16
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


19788..20027
DNA (240bp) protein (80aa)
50S ribosomal protein L28 n=8 Tax=Parabacteroides RepID=A7AEM9_9PORP
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
rpmB; 50S ribosomal protein L28
L3_072_000M1_scaffold_535_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


20047..20235
DNA (189bp) protein (63aa)
50S ribosomal protein L33 n=4 Tax=Parabacteroides RepID=A7AEM8_9PORP
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rpmG; 50S ribosomal protein L33
L3_072_000M1_scaffold_535_18
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20250..20402
DNA (153bp) protein (51aa)
Uncharacterized protein n=18 Tax=Bacteroidales RepID=A7AEM7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEY85189.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
hypothetical protein
L3_072_000M1_scaffold_535_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20608..21732
DNA (1125bp) protein (375aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA polymerase III subunit beta n=3 Tax=Parabacteroides RepID=A7AEM5_9PORP
DNA polymerase III subunit beta
L3_072_000M1_scaffold_535_20
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21743..22513
DNA (771bp) protein (257aa)
Exonuclease, DNA polymerase III, epsilon subunit family n=3 Tax=Parabacteroides RepID=A7AEM4_9PORP
Exonuclease DNA polymerase III epsilon subunit family {ECO:0000313|EMBL:CDD14029.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA polymerase III subunit epsilon
L3_072_000M1_scaffold_535_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22519..23670
DNA (1152bp) protein (384aa)
Alcohol dehydrogenase, iron-dependent n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AEM3_9PORP
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:EDN86499.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
alcohol dehydrogenase
L3_072_000M1_scaffold_535_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23810..25012
DNA (1203bp) protein (401aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=2 Tax=Parabacteroides merdae RepID=A7AEM2_9PORP
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EDN86498.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
flavoprotein
L3_072_000M1_scaffold_535_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25015..25914
DNA (900bp) protein (300aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AEM1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86497.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_535_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25927..27591
DNA (1665bp) protein (555aa)
DNA repair protein RecN n=2 Tax=Parabacteroides merdae RepID=A7AEM0_9PORP
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA repair protein recN
L3_072_000M1_scaffold_535_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27657..28433
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4K2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14034.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_535_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28436..28876
DNA (441bp) protein (147aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AEL7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86493.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_072_000M1_scaffold_535_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28985..29749
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XCI3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14036.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
tRNA/rRNA methyltransferase
L3_072_000M1_scaffold_535_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29757..30137
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6BHQ3_9PORP
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EDN86491.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
translation initiation inhibitor endoribonuclease L-PSP
L3_072_000M1_scaffold_535_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30284..32098)
DNA (1815bp) protein (605aa)
UPF0313 protein BN675_02436 n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WRV9_9PORP
UPF0313 protein BN675_02436 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_072_000M1_scaffold_535_30
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32304..33305
DNA (1002bp) protein (334aa)
Lactate/malate dehydrogenase NAD binding domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X4K6_9PORP
Lactate/malate dehydrogenase NAD binding domain protein {ECO:0000313|EMBL:CDD14039.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
malate dehydrogenase
Displaying items 1-30 of 43 in total

View Taxonomy